Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq57 141 9e-29 seq59 138 1e-27 seq1 107 2e-18 >seq57 Length=1190389 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||||| ||||||| || ||||| || ||||||||||| || | Sbjct 631297 ACCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 631356 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||||||||| | ||||| |||||||| || ||||| Sbjct 631357 CAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 631416 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||| ||| ||| | || || | || || Sbjct 631417 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 631476 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| |||||||| ||||| Sbjct 631477 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524 >seq59 Length=1145648 Score = 138 bits (152), Expect = 1e-27 Identities = 913/1463 (62%), Gaps = 38/1463 (3%) Strand=Plus/Plus Query 153999 AAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACA 154058 ||||||| | || || ||||| | || ||||| ||||||| | ||| || || Sbjct 141063 AAATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTG 141122 Query 154059 TACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTT 154118 || | ||| ||| |||| ||||| || |||||||| || || ||||| || || | Sbjct 141123 TAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAA 141182 Query 154119 GCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAAT 154178 || || ||||| |||| || || || || || | ||||| |||||||| Sbjct 141183 GCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCC 141242 Query 154179 TTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAA 154238 || || || ||||||||||| | | | |||| | |||||||| ||||| |||| Sbjct 141243 TTCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGG 141302 Query 154239 ACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAG 154298 | || || ||||||| | || | |||||| |||| | ||||| Sbjct 141303 ATGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAAC 141362 Query 154299 TCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATT 154358 || || || ||||| || || | ||||| | |||||| |||||||| ||| | | || Sbjct 141363 TCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTT 141422 Query 154359 TTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGA 154418 | ||| | || ||||||||||| | | || | | || |||||||| | || ||| Sbjct 141423 TGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGA 141482 Query 154419 ATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAA 154478 | || | || | || ||||| | || || || || || | ||||| Sbjct 141483 ACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAG 141542 Query 154479 TAATTGATATCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 154538 || || |||||||||||||| || | Sbjct 141543 TAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGC 141602 Query 154539 GCGACAAAATCAAAC----ACTCCGCTTTTAATAAAACGATTTACA-CAC-ACAGACGCC 154592 | |||| || || |||| ||| | |||| || | || | | | || ||| Sbjct 141603 TTGGCAAAGTCGTACGTTTTGTCCGGTTTCA--CAAAC-ATGTTCAGCGCGATCGAGGCC 141659 Query 154593 AAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATTGCACAATTTCTGCGCACAAATT 154651 || ||||| || || ||||| || | || ||| | ||| || || | |||| ||| Sbjct 141660 AAATTGCACACCGCTATTTCATC-CTTCGACGAGTACTCCACTATCTCGGTACACAGATT 141718 Query 154652 ACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTA 154711 || |||||||| | ||| | |||||| ||| |||||| || || ||||| Sbjct 141719 GGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTA 141778 Query 154712 CAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC- 154770 || |||||||| |||||||||||| || | ||| || || || || || | || Sbjct 141779 CAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGAT--GGCAAACCATAGGTCC 141836 Query 154771 -GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCA 154829 | |||| || || | |||||||| || ||| || |||||| || || Sbjct 141837 TGTGCCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCG 141896 Query 154830 AACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCAC 154889 |||||| | | ||| | ||| ||||| ||| || || ||||||| |||| Sbjct 141897 AACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCAC 141956 Query 154890 ATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAA 154949 |||||||| | || || | ||| |||| |||||| | ||||| ||||| |||| Sbjct 141957 ATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATG 142016 Query 154950 TCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATG 155009 || || || || || ||| ||||| ||| | || || ||| || |||| Sbjct 142017 TCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATA 142076 Query 155010 TCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCG---TTTTCCTCCTTGA 155066 || ||||||| || || | || | ||| | ||||| || || || || ||| Sbjct 142077 TCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGA 142136 Query 155067 TCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTG 155126 ||||||| || | || ||||| ||||||| || || ||| ||| | | | Sbjct 142137 TCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATC 142196 Query 155127 CCGTTGGTGCC----ACGTA--TCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACG 155180 || || ||||| | ||| | | || ||||| | || || || || | Sbjct 142197 CCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGA--ATGC----AGTGCACGTTCAGC 142250 Query 155181 CCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCT 155240 || | ||| ||| | |||| || || | ||||| | | | || ||||| || || Sbjct 142251 CCGATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCC 142310 Query 155241 TTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG-AGGGCA 155299 | || ||||| || || || | || || || || || | || || | | | | Sbjct 142311 TCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTA 142370 Query 155300 GCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA--AG-TT 155356 | |||||||||| | || || || || ||||| | | ||| | || || Sbjct 142371 G-CGGCCGCAAACATGGTCGGTGAGGCATGGGTAAA---GTAGCGCTCGGAAAGCAGATT 142426 Query 155357 GTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAG 155416 ||| || |||||||| || |||||||| |||||| |||||||| || ||||||||||| Sbjct 142427 GTACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCATCAG 142486 Query 155417 CATGTGTTGAATGCGCTCCGCAA 155439 ||||||||| |||||| ||| Sbjct 142487 CATGTGTTGCGGTCGCTCCACAA 142509 >seq1 Length=5975090 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || ||||| | || ||||| || || ||||| || || | Sbjct 5043160 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043101 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| ||||||||||||||| | || || |||||||| || || || Sbjct 5043100 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043041 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | || || Sbjct 5043040 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042981 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| ||| || ||||| || ||||| Sbjct 5042980 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||| | || ||||| || || ||||| || || | Sbjct 5043389 ACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5043330 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||||||||| ||| | || || |||||||| || || || Sbjct 5043329 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGG 5043270 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| ||| | || || | || || Sbjct 5043269 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAAC 5043210 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| ||| || ||||| || ||||| Sbjct 5043209 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499498835017240