Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq59 161 1e-34 >seq59 Length=1145648 Score = 161 bits (178), Expect = 1e-34 Identities = 1047/1669 (63%), Gaps = 61/1669 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | || || | ||||||||| |||||| || || | || ||||| | || | | Sbjct 142570 TACAACTATTTCGGCTTCAAAACACTGGAGCGTTCCTATTTGCTGAAGATCAAGGGTAAG 142511 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||| || ||||||||||||| |||||||| |||||||| | ||| Sbjct 142510 ATTGTGGAGCGACCGCAACACATGCTGATGCGCGTTGCCATCGGTATTCACGGTGAAGAC 142451 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG--ACA---TGCGGGACAAGAGGTA---TACCA 93889 || || ||| | | | ||| ||| ||| | || | || |||| Sbjct 142450 ATT--GA------TGCTGCCATCGAGACGTACAATCTGCTTTCCGAGCGCTACTTTACCC 142399 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | |||||| |||| || | || | | || ||| | || || || || | Sbjct 142398 ATGCCTCACCGACCATGTTTGCGGCCGCTACGCAGCGTCCGCAGCTTTCGTCTTGCTTTC 142339 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | || | || |||| || || |||| ||| | || ||| | ||||| Sbjct 142338 TGCTTACCATGTCGGACGACAGTATTGAGGGTATTTACGATACGCTAAAGCAGTGTGCAC 142279 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 || || |||| || || || |||||| | | || ||| | | || |||| || Sbjct 142278 TGATTTCCAAATCGGCCGGCGGTATCGGGCTGAACGTGCACTGCATTCGCGCCAAAGGAA 142219 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||| ||| || ||||| | || ||||| | || || ||||| || || | || Sbjct 142218 CGTACATCTCCGGCACGAATGGGATTTCGAACGGGTTGGTGCCGATGCTGCGCGTTTACA 142159 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| || |||||||| |||||||| | | || || | || || ||| Sbjct 142158 ACAACACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGGCCCGGCGCCTTTGCCATCT 142099 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | ||||| || ||||||| ||| | | || | || ||| || ||| ||||| Sbjct 142098 ACCTCGAACCATGGCACGGGGATATATTCGAGTTTCTGGATCTGAAGAAAAACACCGGCA 142039 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | | ||| | ||| | |||||||| || ||| | || || || || ||| Sbjct 142038 AGGAGGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGGATCCCGGATCTGTTCATGC 141979 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || || ||| ||| ||||| || | || || | || || |||||| || Sbjct 141978 AGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCACACGACTGCCCCGGATTGG 141919 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA--- 94426 | ||| ||| || || || | |||| || | ||||| | |||| Sbjct 141918 CTGACACTTGGGGCGAAGAGTTCGAGAAGCTGTACACTGGGTACGAGCAGGAGGGTCGAT 141859 Query 94427 ----AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482 | |||||| || | || | | || ||| | ||| | || ||| Sbjct 141858 TTATACGCCAGG-------TGAAGGCACAGGACCTATGGTTTGCCATCATCGAATCGCAG 141806 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542 ||||| ||||| || ||||| ||| |||||| | |||| |||| ||| ||| Sbjct 141805 GTGGAAACGGGCGTTCCGTACATGCTGTACAAGGATGCGTGCAACCGCAAGAGCAATCAG 141746 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||| || |||| || ||| | || |||||||| |||||||| || ||||| | || Sbjct 141745 CAGAACATCGGCACCATAAAGTGTTCCAATCTGTGTACCGAGATAGTGGAGTACTCGTCG 141686 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662 ||| || || || ||||| || ||| ||| ||| ||| || || ||| | Sbjct 141685 AAGGATGAAATAGCGGTGTGCAATTTGGCCTCGATCGCGCTGAACATGTTTGTGAAACCG 141626 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 | | | |||| || ||| | | | ||| |||| || ||||| ||| | Sbjct 141625 GACAAAACGT--ACGACTTTGC-CAAGCTGAAGGA-----TG----TCGCG--AAGATTT 141580 Query 94723 -GTCTTG-AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 | | | || ||||||| | ||||| | |||| ||| || || ||||||||| || Sbjct 141579 TGACGCGCAATCTGAACAAAATTATCGATATAAACTACTATCCAGTACCGGAGGCGAAGC 141520 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 ||| ||| || ||| |||| ||||| ||||| || ||||| | || || ||| | Sbjct 141519 GCTCCAACATGCGGCACAGGCCGATCGGTATCGGTGTTCAGGGCATGGCCGATGCGTTCA 141460 Query 94841 TGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCG 94900 | ||||||| || ||||| | || || |||| | || |||| Sbjct 141459 TTTTGATGCGCTATCCGTACGAAAGCGAGGAGGCCCAAAAGCTGAACCAACAAATTTTCG 141400 Query 94901 AAAGCATTTATTACGGGGCCATGAAA-CAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 ||| || || ||||| || || || | | | || | |||||| | || || ||| Sbjct 141399 AAACAATCTACTACGGAGCATTGGAAGCGAGCTGTG-AGTTGGCC-GCCCG--CGACGGA 141344 Query 94960 CCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG 95019 || ||||| ||| | || || | | ||||| | |||| ||| | ||| Sbjct 141343 CCGTACGAAACGTACGAAGGGAGTCCGGTAAGCAAAGGCATCCTGCAGTACGAAATGTGG 141284 Query 95020 GGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 | | || |||| ||| | | |||| | | | | || || ||| Sbjct 141283 AAGAAGGAACCGTCGGATCTTTGGAATTGGGCCGAGTTGAAGGAAAAAATTGCAAAGCAC 141224 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || | || ||||||| |||| || ||||| || || || ||||| || ||| | Sbjct 141223 GGCATCCGCAATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTG 141164 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || ||||||||||| |||||||| | ||| |||||||| ||||| |||| || || || Sbjct 141163 GGTAACAACGAGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCC 141104 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || | || | ||| | || || || | || |||| | ||||| ||||| Sbjct 141103 GGCGAGTTTCAGGTGGTGAACCACCATCTGCTGCAAGATTTGACAGCGATGGGTCTGTGG 141044 Query 95260 GGT---GACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 | | |||| | ||||||||| | || | |||||| || | || | |||| Sbjct 141043 GATCTAGACATG---AAGAACCAAATTCTGTCCAACAACGGATCGATTCAAAGCATCGAA 140987 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCT--ACAAGACCGTGTGGGAGAT 95363 |||||| |||| || | ||| ||| |||| || ||||||||||| Sbjct 140986 TCGATACCGAAGGAAAT--ACGCGATCTGTACAAAACGGTGTGGGAGAT 140940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494578672801160