Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq14 107 1e-18 seq13 91.5 1e-13 >seq14 Length=2766867 Score = 107 bits (118), Expect = 1e-18 Identities = 173/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 |||||||| || || |||| |||||| || ||| | ||| |||| | |||||||| Sbjct 1190921 GCCGGGTTTGGGGTAACGGGCGGCGTACACCGGCTATGGTGCCACCGTTCGTACAAGGCG 1190862 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || | | ||||| | |||| |||| | || || |||||||| ||| Sbjct 1190861 AAGCTGCCGCTCCGCATTATCCTGATGTGCTGCTACTCGATCGCGGGCCAGAACACGATC 1190802 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG-ACGGCCGACCC 108518 | ||||| | ||||| | | || ||||||||||| || ||| |||| || || Sbjct 1190801 TACGACTGGGTCCGGGATCATCGTATCCATCACAAGTACTCGGAAACGGACGGT-GATCC 1190743 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||| ||| |||| ||| || | ||||||| || ||||| ||| || |||| | Sbjct 1190742 ACACAACGCGAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTGCGCAAGCA 1190683 Query 108579 CCCCGA 108584 ||| || Sbjct 1190682 CCCGGA 1190677 >seq13 Length=2876150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 |||||| |||| ||| ||||||| |||||||||||||| || ||||||||||| | || Sbjct 1378000 GGTGGCTTCGTTCGCTTTCGGCGAAGGATGGCACAACTATCATCACGTGTTCCCGTGGGA 1378059 Query 108930 CTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| | |||||| |||| ||| || Sbjct 1378060 CTACAAGACGGCCGAGCTGGGCAACTAC 1378087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381664058102424