Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq59 370 1e-97 seq20 107 2e-18 seq43 102 8e-17 seq6 87.8 2e-12 >seq59 Length=1145648 Score = 370 bits (410), Expect = 1e-97 Identities = 1212/1856 (65%), Gaps = 44/1856 (2%) Strand=Plus/Plus Query 152712 GCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTG 152771 || || ||||| |||| ||| |||||||||||||| || || ||| |||| | Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 152772 TGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTC 152831 || ||||| |||| | | || |||||| |||||| | || |||||||| | Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 152832 TGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAAT-CATGCGTTTTG-CCTTCATCT 152889 ||||| || || || ||||| || ||||||| ||| || |||||| || |||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCA--CGTTTTAACCGAAATCT 140943 Query 152890 CCCAGGCGGTTTTGTACAAAT----TTTTAACGCTATCCGGTATACCTTCAATGTTCTGA 152945 |||| | |||||||||| || | || | | |||||| ||| ||| | ||| Sbjct 140944 CCCACACCGTTTTGTACAGATCGCGTATTTCC----TTCGGTATCGATTCGATGCTTTGA 140999 Query 152946 ATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTA 153005 || || || |||| | | ||| ||| || || | ||| || Sbjct 141000 ATCGATCCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCT 141059 Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 | | || | | || | ||||| ||||| ||||||||||| | | || || | Sbjct 141060 GTCAAATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGA 141119 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 || || ||| ||| | ||||| ||||| ||||| || || | ||||| ||||| Sbjct 141120 TTGTAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTC 141179 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCG 153185 | ||||| ||||| |||| || || ||||| || | ||||||| | ||| | Sbjct 141180 GAAGCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTT 141239 Query 153186 TCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGT 153245 ||||||||| | ||||| ||| || |||||||| | |||||||| |||||||| Sbjct 141240 TCCTTCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGC 141299 Query 153246 AACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305 | | ||| || | ||||| || | |||| ||| |||||||| |||| Sbjct 141300 AGGATGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCC 141359 Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365 | || ||||| || || | || || ||||| || |||||| ||||||| || || Sbjct 141360 AACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGC 141419 Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425 || || ||||| |||||||| ||||| || | || || ||||||| ||| Sbjct 141420 TTTTGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCC 141479 Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGA 153485 || | ||||| ||||| || | ||| | |||| |||| |||| || || ||| Sbjct 141480 TGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGA 141539 Query 153486 TAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTA 153545 |||| || ||||||||||||||| || |||||| || | || | | |||| Sbjct 141540 TAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTC 141599 Query 153546 AGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGAT--TCACGGCAATAG 153603 || || | || || || || || ||| || | | || || ||| || || | Sbjct 141600 AGCTTGGCAAAGTCGTACGT---TTTGTC--CGGTTTCACAAACATGTTCAGCGCGATCG 141654 Query 153604 ACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAG 153662 | |||| ||| || || || | || || || || ||||| ||| ||||||| || Sbjct 141655 AGGCCAAATTGCACACCGCTATTTCATCCTTCGACGA-GTACTCCACTATCTCGGTACAC 141713 Query 153663 AGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCT 153722 || ||| || |||||| ||| | || ||||||||||| ||||| |||||||| || Sbjct 141714 AGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCC 141773 Query 153723 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGC 153779 ||| | ||||||||||| |||| || || || |||| ||||| ||| ||||| || Sbjct 141774 TTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACC-AT-- 141830 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 |||||||| || |||| | | | | || ||||| |||||| | |||||| Sbjct 141831 AGGTCCTGTGCCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGC 141890 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||| ||||| ||||| | ||| || | ||||| || | || || |||||||| Sbjct 141891 TTCTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGG 141950 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 |||||| |||| || | || || |||||||||||||||| | ||| || ||||| Sbjct 141951 CTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAG 142010 Query 153960 ATGAGGTCGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGC 154017 | | |||||| | | ||| |||||| ||| |||| ||||||| || || | Sbjct 142011 AACATGTCGCG-GGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTC 142069 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTC 154074 | | || || ||||||| ||||| | ||||| ||| | ||| || ||| || | Sbjct 142070 GA-ATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGC 142128 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 | |||||||| |||| || || | |||||| | ||||||| ||| || ||| ||| Sbjct 142129 CACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGT 142188 Query 154135 TTGCGGTGCCGTTGGT--CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192 | | | || || || || | ||| | | || |||||| | |||||||| Sbjct 142189 TCGAAATCCCATTCGTGCCGGA--GATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTT 142246 Query 154193 AACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAG 154250 | || || |||||| | | || || || ||| ||| | || ||||| ||| Sbjct 142247 CAGCCCGATACCGCCGGCCGATTTGGAAAT--CAGTGCACACTGCTTTAGCGTATCGTAA 142304 Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310 || || || || || ||||| | | |||| || || || | | |||||| Sbjct 142305 ATACCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGC 142364 Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA-CAGTTTTTGGCTCATCAT 154369 |||| | |||| ||| | ||| || || || ||||| || | || | || Sbjct 142365 TGCGTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGG-AAAGCAG 142423 Query 154370 GCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCAT 154429 |||||| |||||||| | || || || || |||||||| |||| || |||||||| Sbjct 142424 ATTGTACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCAT 142483 Query 154430 GAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTC 154489 |||||||| ||||| || || | | || | ||||||| | ||| | || Sbjct 142484 CAGCATGTGTTGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTC 142543 Query 154490 GAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCG 154545 || |||||| | |||||||| ||||| | ||||| | || | | |||||||| Sbjct 142544 CAGTGTTTTGAAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCG 142599 >seq20 Length=2346360 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || || || |||| |||| | |||||| || || ||||| Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || |||||||| || || || || |||||||| Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | |||||||| || |||||||||||| || |||||| |||||| Sbjct 834307 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTC 834366 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 || || || |||| |||| | |||||| || || ||||| ||||| || ||||| Sbjct 834367 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 834426 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || || | | || | ||||| | || ||| ||||| | ||| | || || Sbjct 834427 GATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 834486 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || || || || |||||||| Sbjct 834487 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || |||| |||| | |||||| || || ||||| Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || |||||||| || || || || |||||||| Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 >seq43 Length=1551626 Score = 102 bits (112), Expect = 8e-17 Identities = 201/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 57148 TTGCCGGTGGTCTTGCTCAGCGGATGTTCGGTGAGGCCGAGATCGTCGCGCTTCGCGTGA 57207 ||||| ||||| ||||||||| |||| | || ||||||||||| | | || ||| Sbjct 826286 TTGCCAGTGGTTTTGCTCAGCTCATGTCCTCCCAGCCCGAGATCGTCCGGATCGGCATGA 826227 Query 57208 ACCACCAGACTGCGGCCGACGACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATC 57267 || ||||| |||||| || ||| | | || |||| ||| | | ||| | Sbjct 826226 ACTACCAGCGAGCGGCCCACTACGTTCATCGGTCCACTCAGCGCAATCTGGCTCGCGACC 826167 Query 57268 TTGTCCAC-TTCGGTGAGGGCGTTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGAC 57326 |||||| |||| | || ||| | | || ||| |||||||| ||| ||| | Sbjct 826166 AAGTCCACCTTCGCTTCAC-CGCTGG---CGTCCGCTACGATGTTGCCCATGTCACCGGC 826111 Query 57327 GTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGCCGGTGGGGTTAAAGTGCTCGCC 57386 || ||| || |||| | || || |||||| ||||| ||||| ||||| |||| Sbjct 826110 ATGGCGCTCGTCCGCATCCGGGGCACCGTGTGTTTTGCCGTGCGGGTTGAAGTGAGCGCC 826051 Query 57387 CGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAACGTGAAATCCGTG 57440 || ||| |||| |||||| || |||| ||||||||||| | ||| ||||| || Sbjct 826050 CGTGGACATGCAACCGTTGGTGTTGTCTCCGAACTCGTGGATGTGGAATCCATG 825997 >seq6 Length=4219845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| || | || | ||| | | | |||||||| || |||||||||||| Sbjct 2100918 GCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2100977 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || ||||||| |||| |||||||| || ||||| || Sbjct 2100978 CAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 2101037 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | || || | | ||| || Sbjct 2101038 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGAC 2101097 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||| || || ||||| || || |||||||| Sbjct 2101098 CTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496117423143120