Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq59 194 2e-44 seq57 138 1e-27 seq20 123 2e-23 seq6 113 4e-20 seq1 100 3e-16 >seq59 Length=1145648 Score = 194 bits (214), Expect = 2e-44 Identities = 720/1107 (65%), Gaps = 40/1107 (4%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || || ||||| |||| | ||||||||||||| ||||||||||||||||| || Sbjct 140738 GTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCCGT 140797 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA---TGACCGAGTACGTGGG 145835 || || | | ||| ||||||||| || | || || | ||| || | Sbjct 140798 TTTCAGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTTGCCATAGTTCG---G 140854 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 |||||| || | || | ||||| |||||| || || | | ||||||| || || Sbjct 140855 TTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGC 140914 Query 145896 CATGTCTATCATGCAC--TTTGATTTAATT-TCCCATGCGGTTTTAAAGAGATCCTTGAC 145952 ||| | | |||||| ||| | || | ||||| | ||||| | ||||| | Sbjct 140915 CATCT---TAATGCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTAT 140971 Query 145953 GTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCG 146012 | || ||||| || ||| | || | || || || | || || |||| ||| Sbjct 140972 TTCCTTCGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTT 141031 Query 146013 CAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCAC 146072 || ||| || | | || || | | | | |||| ||||| ||||| Sbjct 141032 CATGTCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCAC 141091 Query 146073 CTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGA 146132 |||||||||||||| || || |||| || |||||| ||| |||| ||||| || Sbjct 141092 CTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGA 141151 Query 146133 CTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGA 146192 |||||||||||| | || || ||||||| |||||||||||| |||| ||||| || Sbjct 141152 CTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGA 141211 Query 146193 GTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGAT 146251 || | | |||||| ||||| ||| |||||| | | || |||||||| || ||| Sbjct 141212 ATTGCGGATGCCGTG-CTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCC---AAAGAT 141267 Query 146252 CCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCT 146311 ||| || | | || | | ||||| |||| |||| | | || || | Sbjct 141268 CCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGACTCCCTT 141327 Query 146312 CGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAA 146371 |||||| ||| || || |||||| ||||| || ||||| ||||||| || Sbjct 141328 CGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTCCAATGCTCCGT 141387 Query 146372 AGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCT-GGCCTCCTCGCTGTCGTAGGGG 146430 |||| || || | || | ||| | | ||| | |||||||||||| ||||| || Sbjct 141388 AGTAGATTGT-TTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCTTTCGTA-CGG 141445 Query 146431 ATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTG 146489 ||| || | | | || || ||||| | ||||| | |||| ||| | || | ||| Sbjct 141446 ATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGATCGGCCTGTG 141505 Query 146490 TTTCTTGTTACTGTTCGCAGCGCCCGCAGT--GGGATAGTGGTTGCTGTCGATGATCTTG 146547 | |||| | ||| |||| | || ||||||| ||| | ||||| || ||| Sbjct 141506 CCGCATGTT--GGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATCGATAATTTTG 141563 Query 146548 TTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTA 146607 || ||||| ||| | ||| |||| | | |||||| | || |||| | ||||| Sbjct 141564 TTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTCGTACGTTTT- 141622 Query 146608 GTTTTAACG--TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCT 146665 || || || || || |||| | ||||| |||||||| || || || || | | Sbjct 141623 GT----CCGGTTTCACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCGCTATTT 141678 Query 146666 CGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCC 146724 | ||||| | || | |||| ||| ||||||| || || ||| ||||| ||| |||| Sbjct 141679 CATCCTTCGACG-AGTACTCCACTATCTCGGTACACAGATTGGAACACTTTATGGTGCCG 141737 Query 146725 AAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCC 146781 | || | || || || ||| |||||| | |||||||| ||||||||||| | Sbjct 141738 ATGTTCTGCTGATTGCT---CTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGAACG 141794 Query 146782 CCGGTTTCGACATTGGTCTCGACGATG 146808 || ||||| || | | |||| |||| Sbjct 141795 CCCGTTTCCACCTGCGATTCGATGATG 141821 >seq57 Length=1190389 Score = 138 bits (152), Expect = 1e-27 Identities = 173/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 126879 ATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGT 126938 ||||| | |||||||| | ||||| ||||| ||| | ||||| || || ||||| |||| Sbjct 631291 ATACT-CACCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGT 631349 Query 126939 AATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGAT 126998 | || || |||||| ||| || ||||| || || ||| |||| | |||||||||| Sbjct 631350 AGTCCGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGAT 631409 Query 126999 CGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTAC 127058 | ||||| || || ||||| ||| ||| || ||| | | |||| ||||||| | Sbjct 631410 CTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAG 631469 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||| || | || | || |||||||| || ||||| || |||||||||||| Sbjct 631470 GCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 631525 >seq20 Length=2346360 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | ||| | ||||| || | || ||||| || || || ||||| ||| Sbjct 834289 TCCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 834348 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| || || ||||| ||||| ||| ||||||| ||||||||||| ||||| Sbjct 834349 CAGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 834408 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | |||| ||||||| |||||| Sbjct 834409 AATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGAC 834468 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 834469 CTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| || || ||| ||| || Sbjct 834764 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 834823 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| ||||||| ||||||||||| ||||| || |||||||||||| | Sbjct 834824 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834883 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| ||||||| |||||| || | || | || ||| Sbjct 834884 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 834943 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 834944 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| || || || || || Sbjct 834536 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 834595 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| ||||||| ||||||||||| ||||| || |||||||||||| | Sbjct 834596 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834655 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| ||||||| |||||| || | || | || ||| Sbjct 834656 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834715 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 834716 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 >seq6 Length=4219845 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | ||||| ||| | || ||||| || || || ||||| ||| Sbjct 2100916 GCGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2100975 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| || || ||||| || || ||| |||||| ||||||||||| || Sbjct 2100976 GACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGC 2101035 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 2101036 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCG 2101095 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || ||||| || || |||||||| Sbjct 2101096 ACCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq1 Length=5975090 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || || || || || || | Sbjct 5043388 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043329 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| ||||||||||| || || Sbjct 5043328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043269 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||| | ||| || Sbjct 5043268 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5043209 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || ||||||||||| || || || ||||||||| Sbjct 5043208 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || || || || || || | Sbjct 5043160 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043101 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||||| ||||||||||| || || Sbjct 5043100 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043041 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||| | ||| || Sbjct 5043040 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042981 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || ||||||||||| || || || ||||||||| Sbjct 5042980 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || || || || || || | Sbjct 5042932 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5042873 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| ||||||||||| || || Sbjct 5042872 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5042813 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||| | ||| || Sbjct 5042812 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042753 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || ||||||||||| || || || || |||||| Sbjct 5042752 TCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATG 5042705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475361888385040