Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq59 277 2e-69 >seq59 Length=1145648 Score = 277 bits (306), Expect = 2e-69 Identities = 1193/1869 (64%), Gaps = 38/1869 (2%) Strand=Plus/Minus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||| || ||||| ||||| || | |||||| | || |||||| || ||| Sbjct 142579 GATTTCGGGTACAACTATTTCGGCTTCAAAACACTGGAGCGTTCCTATTTGCTGAAGATC 142520 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 ||| ||| | | || || ||||| ||||| |||||||| || || || | ||| Sbjct 142519 AAGGGTAAGATTGTGGAGCGACCGCAACACATGCTGATGCGCGTTGCCATCGGTATTCAC 142460 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || ||||| || || | ||| || ||| || || | || | | || || Sbjct 142459 GGTGAAGACATTGATGCTGCCATCGAGACGTACAATCTGCTTTCCGAGCGCTACTTTACC 142400 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 || || || || |||| || |||| ||| || || ||| | || || || ||| Sbjct 142399 CATGCCTCACCGACCATGTTTGCGGCCGCTACGCAGCGTCCGCAGCTTTCGTCTTGCTTT 142340 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 |||| ||| || || ||||| || ||||| || || || | | || || Sbjct 142339 CTGCTTACCATGTCGGACGACAGTATTGAGGGTATTTACGATACGCTAAAGCAGTGTGCA 142280 Query 123132 TTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA 123191 |||||||||||| | |||||| || || ||||||||||| | | | | | ||| Sbjct 142279 CTGATTTCCAAATCGGCCGGCGGTATCGGGCTGAACGTGCACTGCATTCGCGCCAAAGGA 142220 Query 123192 AGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTAC 123251 | |||| |||| | || || | |||| | | | |||||||| |||||| Sbjct 142219 ACGTACATCTCCGGCACGAATGGGATTTCGAACGGGTTGGTGCCGATGCTGCGCGTTTAC 142160 Query 123252 AATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATC 123308 || ||| | | ||| |||| || ||||| ||||| || ||||| | || ||| Sbjct 142159 AACAACACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGGCCCGGCGCCTTTGCCATC 142100 Query 123309 TATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGG 123368 || || ||||| ||||||| ||| | | ||| ||| | || | || |||| || Sbjct 142099 TACCTCGAACCATGGCACGGGGATATATTCGAGTTTCTGGATCTGAAGAAAAACACCGGC 142040 Query 123369 GCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATG 123428 ||| || | |||||||| |||| ||||| | ||| | || ||| |||| ||| Sbjct 142039 AAGGAGGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGGATCCCGGATCTGTTCATG 141980 Query 123429 CGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTG 123488 | || || | | ||| ||||| || ||||| || | || ||||| ||| Sbjct 141979 CAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCACACGACTGCCCCGGATTG 141920 Query 123489 AGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548 ||| || ||| | |||| || || ||||| | ||||||| || || | Sbjct 141919 GCTGACACTTGGGGCGAAGAGTTCGAGAAGCTGTACACTGGGTACGAGCAGGAGGGTCGA 141860 Query 123549 CAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGTC 123605 | | ||||| ||||| || | | ||| || |||||| | || || Sbjct 141859 TTTATACGCCAGGTGAAGGCACAGGACCTATGG---TTTGCCATCATCGAATCGCAGGTG 141803 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||||||||| ||||| || || |||||| | || | ||||||| Sbjct 141802 GAAACGGGCGTTCCGTACATGCTGTACAAGGATGCGTGCAACCGCAAGAGCAATCAGCAG 141743 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGATG 123723 ||| | || || ||||| ||| ||||| || |||| || | || ||| ||| | Sbjct 141742 AACATCGGCACCATAAAGTGTTCCAATCTGTGTACCGAGATAGTGGAGTACTCGTCGAAG 141683 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAAC 123782 ||| || | || ||||| |||||||| ||||| ||| |||| | || |||| | Sbjct 141682 --GATGAAATAGCGGTGTGCAATTTGGCCTCGATC-GCGCTGAACATGTTTGT-GAAACC 141627 Query 123783 GG------CGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAAT 123836 || || | | ||| | || ||| || | | || | | | ||| Sbjct 141626 GGACAAAACG-TACGACTTTGCCAA-GCTGAAGGATGTCGCGAAGATTTTGACGCGCAAT 141569 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTT---GGAGG--AAGCGCGTTTGTCTA 123891 ||||||||||||||||| | || | ||||| | ||||| |||||| || | Sbjct 141568 CTGAACAAAATTATCGATATAAACTACTATCCAGTACCGGAGGCGAAGCGC-----TCCA 141514 Query 123892 ATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGC 123951 | || ||||| ||| |||| | || |||| || ||||||| ||||| | || Sbjct 141513 ACATGCGGCACAGGCCGATCGGTATCGGTGTTCAGGGCATGGCCGATGCGTTCATTTTGA 141454 Query 123952 TGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAA 124011 ||||| |||||||||||||| || || | ||| || ||||| |||||||| Sbjct 141453 TGCGCTATCCGTACGAAAGCGAGGAGGCCCAAAAGCTGAACCAACAAATTTTCGAAACAA 141394 Query 124012 TTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAA 124071 | || ||||| || ||||| |||||||| || | || |||| ||||||||| Sbjct 141393 TCTACTACGGAGCATTGGAAGCGAGCTGTGAGTTGGCCGCCCGCGACGGACCGTACGAAA 141334 Query 124072 GTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACAC 124131 |||| || || |||| ||| ||| || |||||||||| |||||||| || Sbjct 141333 CGTACGAAGGGAGTCCGGTAAGCAAAGGCATCCTGCAGTACGAAATGTGGAAGAAGGAAC 141274 Query 124132 CGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTA 124191 || | || | ||| | ||| || || || || || | | |||||| | || | Sbjct 141273 CGTCGGATCTTTGGAATTGGGCCGAGTTGAAGGAAAAAATTGCAAAGCACGGCATCCGCA 141214 Query 124192 ACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACG 124251 | |||||| || |||| ||||| || || | || || ||||| || || ||||||| Sbjct 141213 ATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTGGGTAACAACG 141154 Query 124252 AATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTC 124311 | |||||||| |||| ||| ||| | ||| || || || | ||||||| |||| Sbjct 141153 AGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCCGGCGAGTTTC 141094 Query 124312 AAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACA 124371 | ||| | || || ||| || || | || ||| ||| | | ||| ||| | ||| Sbjct 141093 AGGTGGTGAACCACCATCTGCTGCAAGATTTGACAGCGATGGGTCTGTGGGATCTAGACA 141034 Query 124372 TGCGCAACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAA 124430 || ||| ||||| | | | || | || | || |||||| ||||| ||| | Sbjct 141033 TGAAGAACCAAATTCTGTCCAACAACGG-ATCGATTCAAAGCATCGAATCGATACCGAAG 140975 Query 124431 CACGTCAAGC-AACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAAT 124489 | | | || | ||||||||||| |||||||| || |||| | ||| | || Sbjct 140974 GAAAT-ACGCGATCTGTACAAAACGGTGTGGGAGATTTCGGTTAAAACGTGCATTAAGAT 140916 Query 124490 GGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGA 124549 ||| | ||||| || |||| | ||||| ||||| || ||| | || || || Sbjct 140915 GGCTGCTGACCGGGGTGCGTTTATCGATCAGTCGCAATCGTTCAACATACACGTGGCCGA 140856 Query 124550 ACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAAC 124609 ||| | ||| | | |||| || ||| | ||| |||| | ||||| ||||| Sbjct 140855 ACCGAACTATGGCAAGCTGACATCGATCCACTTTTACGGCTGGAAAATGGGACTGAAAAC 140796 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 ||||||||| || | |||| |||||||| | |||| || || ||||| || ||||| Sbjct 140795 GGGCATGTACTATCTGCGAACAAAACCGGCCGTAAATGCGATCCAGTTTACGGTGGACAA 140736 Query 124670 ATCTAAACT 124678 | | || || Sbjct 140735 AACGAAGCT 140727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451871152915160