Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq59 159 6e-34 seq24 140 5e-28 >seq59 Length=1145648 Score = 159 bits (176), Expect = 6e-34 Identities = 338/499 (68%), Gaps = 4/499 (1%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||| ||||||||||| ||||| || || || ||||| || | ||| ||||||||| Sbjct 140729 CTTCGTTTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTA 140788 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || || ||| | | ||| ||||| | ||| || || | ||| |||| Sbjct 140789 CATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTTGCCATA 140848 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || ||||||| ||| ||||| | || || || ||||| || | |||| || Sbjct 140849 GTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTC 140908 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| || || || || |||||||||||||||||| ||| ||| || | Sbjct 140909 AGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCG 140968 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | | || | || | | | || ||||| ||||||| || || | | Sbjct 140969 TATTTCCTTCGGTATCGATT-CGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGT 141027 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAAC-CTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | || |||||| |||| | ||| ||| || ||| ||| ||| |||| Sbjct 141028 TCTTCATGTCTAGATCCCACAGACCCATCGCTG-TCAAATCTTGCAGCAGATGGTGGTTC 141086 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | |||||| || ||||| || || | || || | | |||| ||| | |||||| Sbjct 141087 ACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCG 141146 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || | ||||||||| || || || || || || || || ||||| || |||| ||| Sbjct 141147 AAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGC 141206 Query 204311 AGGGAGTTGCGCACACCGT 204329 || || ||||| | |||| Sbjct 141207 AGCGAATTGCGGATGCCGT 141225 Score = 100 bits (110), Expect = 5e-16 Identities = 192/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 205127 GGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGAT 205185 || |||||||| |||||| | | ||| || ||| | || ||| ||||| || ||| Sbjct 141939 GGGCACATCAGGCTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGATCCGGGAT 141997 Query 205186 CCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAA 205245 ||||||| |||| |||| || ||||| | | | || | || ||| || |||| Sbjct 141998 CCACAGGGCGTAGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAG 142057 Query 205246 GTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTG 205304 ||||| || || | || || ||||||| || || | | | ||| | ||||| | Sbjct 142058 ATCCAGA-AACTCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGG 142116 Query 205305 GCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCG 205364 ||| |||||| |||||||| ||||| || | | | |||| |||| |||||||||| Sbjct 142117 GCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCG 142176 Query 205365 GCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 |||||| ||||| | |||| ||||||| | |||| Sbjct 142177 GCACCAACCCGTTCGAAATCCCATTCGTGCCGGAGATG 142214 >seq24 Length=2206587 Score = 140 bits (154), Expect = 5e-28 Identities = 237/340 (70%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || |||||||| || ||||| || | ||||| | ||||| || || || | Sbjct 1947396 CAGCAAACGATCCGCCACAAACTCAATGTA-CTGCGACATCAGATCACAATTCATGCCGA 1947454 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || |||| || || ||| || | ||| ||| | ||||| ||| | Sbjct 1947455 GCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACTACCGCATCGCGGA 1947514 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | ||||| || | | | ||| |||| |||| Sbjct 1947515 TGATCTCCGTCACGCGCTCCTTCGAAGGCTTCTGCACCA---GATACTTGAACATCAGGC 1947571 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | || || || || |||| ||||||||||| || || | |||||| || | | | || | Sbjct 1947572 AGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGTAAGAC 1947631 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | |||||| |||||||| || |||| |||||| ||||| || |||| Sbjct 1947632 CCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTGCCGCTGAAGAAGA 1947691 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | ||||| ||||| ||||| || || | | ||| ||||| Sbjct 1947692 TACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAA 1947731 Score = 102 bits (112), Expect = 1e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||||| ||||||||| || ||| || || || || || ||||| ||| |||||| Sbjct 1947938 ATCAGCAGCGAGTACATCTCACTGTGGACGTTCTCCATCGCAATCTGGAAGCCGTAGAAG 1947997 Query 160265 TATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAAC 160323 | ||||||| | ||| ||||||||||| |||||| || ||||||| | || || Sbjct 1947998 CAGCGCGCCTCC-GTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGATTCTCGTTCAC 1948056 Query 160324 CAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATG 160371 | ||||||| || |||||||| |||| |||||| ||||| ||||| Sbjct 1948057 GATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGCGAGATAAAATG 1948104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794922905347760