Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq20 143 3e-29 seq6 136 4e-27 seq57 104 3e-17 seq1 102 9e-17 >seq20 Length=2346360 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 834325 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAA 834384 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 834385 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834444 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || |||| ||||||||| ||||| |||||||| || || Sbjct 834445 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834504 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 834505 GAAGATCTGCAT 834516 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 834553 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAA 834612 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 834613 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834672 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || |||| ||||||||| ||||| |||||||| || || Sbjct 834673 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834732 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 834733 GAAGATCTGCAT 834744 Score = 136 bits (150), Expect = 4e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || || |||||||| |||||||| Sbjct 834781 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAA 834840 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 834841 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834900 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| |||| || || |||| ||||||||| ||||| |||||||| || Sbjct 834901 CTCGATCGTGTC---CGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTT 834957 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 834958 CACGAAGATCTGCAT 834972 >seq6 Length=4219845 Score = 136 bits (150), Expect = 4e-27 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| |||| || Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| |||||||| |||| |||||||| || | ||| | || |||||||||| Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGT 46560 ||||||| ||| | || | | ||| || |||| || || || | || ||||| Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCGACCTCAAGAGTAATGGT 2101112 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| || ||||| ||||| ||| Sbjct 2101113 CTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 2101149 >seq57 Length=1190389 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | ||| ||||| || || |||||||| || || ||||| | Sbjct 631310 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCA 631369 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| || | |||||||| || | || | | ||||| Sbjct 631370 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTA 631429 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||| | || || || | |||||| Sbjct 631430 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 631489 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || ||||| || || || ||||| Sbjct 631490 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524 >seq1 Length=5975090 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| ||||| || ||||| || || ||||| | || || Sbjct 5043142 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043083 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || |||| |||||||| || | ||| | | |||||||||| Sbjct 5043082 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043023 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | |||||| | || || || | |||||||| || Sbjct 5043022 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5042963 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 5042962 CCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| ||||| || ||||| || || ||||| | || || Sbjct 5043370 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043311 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||||| || | ||| | | |||||||||| Sbjct 5043310 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043251 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | |||||| | || || || | |||||||| || Sbjct 5043250 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5043191 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 5043190 CCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| ||||| || ||||| || || ||||| | || || Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| |||||||| || | ||| | | |||||||||| Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5042795 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | |||||| | || || || | ||||| || || Sbjct 5042794 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTT 5042735 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || || || ||||||||||| ||| Sbjct 5042734 CCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 5042702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565073272666920