Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq24 251 7e-62 seq57 127 2e-24 seq6 123 2e-23 seq20 120 3e-22 >seq24 Length=2206587 Score = 251 bits (278), Expect = 7e-62 Identities = 301/409 (74%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 || ||||| ||||| ||||| |||||||| || ||||| | || |||| | ||| Sbjct 1947406 TCCGCCACAAACTCAATGTACTGCGACATCAGATCACAATTCATGCCGAGCATATCGACC 1947465 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 ||||| |||| || | ||| ||||||||| | ||||| ||| || ||| ||| | Sbjct 1947466 GGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACTACCGCATCGCGGATGATCTCCGTC 1947525 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 |||||| || ||| ||||||| || ||||||||||| ||| || || || ||| Sbjct 1947526 ACGCGCTCCTTCGAAGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCGAAATCACAA 1947585 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 ||||| ||||||||||| ||||| || ||||| ||| || | || ||||| ||||| Sbjct 1947586 TGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGTAAGACCCGGCATAAGGCCA 1947645 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || || |||||||| || |||| || || ||||| ||||||| ||||||||||| Sbjct 1947646 CGCTTCTTGAGCCAGAAGATGGACGCAAAGCTGCCGCTGAAGAAGATACCCTCGACGGCA 1947705 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || || |||| |||||||| || | || | ||||| | ||||||| |||||| Sbjct 1947706 GCAAATGCGACCACACGCTCGCCAAAGTTAGCCTTCTTGCTCGAGATCCAGTTAAGCGCC 1947765 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 || || ||||| | || |||||||| | |||||||||||| || |||| Sbjct 1947766 CAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCGATGGCATTAAACA 1947814 Score = 188 bits (208), Expect = 7e-43 Identities = 204/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 ||| | ||| |||||||| || ||| ||||| || ||| ||||||||||| || || Sbjct 1947922 ACGGATGTACGTGTCGATCAGCAGCGAGTACATCTCACTGTGGACGTTCTCCATCGCAAT 1947981 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 || |||||||| ||||| |||||||| |||||||| || || ||| || ||||| Sbjct 1947982 CTGGAAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCACCTCCTGGCTGAACCGTTCGAC 1948041 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 |||||| ||||| ||||| |||||| ||||| || ||||||||||||||| ||| || Sbjct 1948042 CAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGCGAGATAAA 1948101 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 ||| || ||| | ||| |||| |||||||| | ||||||| || ||||| |||| Sbjct 1948102 ATGACGTTCGCT-CGGTTTTAGCGAGTCCCAGTCCTTCATGTCCTTCGATAGGTCTACCT 1948160 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || |||||||| ||||| || || || Sbjct 1948161 CTTCCACGGTCCAGAACGATGCTTCAGC 1948188 >seq57 Length=1190389 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| |||||||| | || |||||| | | Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| || || || |||||||| | || || Sbjct 631464 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 631405 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 631404 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 631345 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || ||| |||||||||| Sbjct 631344 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCG 631310 >seq6 Length=4219845 Score = 123 bits (136), Expect = 2e-23 Identities = 174/236 (74%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| || | || |||||| || Sbjct 2101148 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAG-CC 2101090 Query 38301 ACCG---AC-AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | || || | || | || | | || | || |||| ||||| ||||| || ||||| Sbjct 2101089 ATCGGATACGATCGAG--AATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGC 2101034 Query 38357 CG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 || | || ||||| || || | ||| || || |||||||| |||| |||||||| || Sbjct 2101033 CGGATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCG 2100974 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||| || ||| ||||||| || || | || ||| Sbjct 2100973 ACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGC 2100918 >seq20 Length=2346360 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 834744 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834685 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 834684 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834626 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| || || || ||||||||| Sbjct 834625 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 834566 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| ||||| || ||| || | || || Sbjct 834565 CATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGG 834518 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 834516 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834457 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 834456 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834398 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| || || || ||||||||| Sbjct 834397 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAA 834338 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| ||||| ||||| || || Sbjct 834337 CATCCAGAAGGAGTCGACCCTGCACTTGGTTCTTCG 834302 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 834972 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATCG 834913 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 834912 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834854 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| || | || || || ||||||||| Sbjct 834853 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAA 834794 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| ||||| || ||| || | || || Sbjct 834793 CATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGG 834746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500026680768640