Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 6e-13 seq7 89.7 6e-13 >seq24 Length=2206587 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | |||||| |||| | || || | | ||||| || || ||||| | || Sbjct 1947815 CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAAC 1947756 Query 102150 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 102209 ||| | | ||| | | ||||| ||||| | |||||||||| || ||| Sbjct 1947755 TGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAG 1947696 Query 102210 GGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||||||||| || ||| |||| | || | |||||||||||||| || || || Sbjct 1947695 GGTATCTTCTTCAGCGGCAGCTT-TGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTAT 1947637 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 ||| ||||| |||||| |||||||| || || | ||||||||| Sbjct 1947636 GCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGA 1947591 >seq7 Length=4015228 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 175994 GTAAAGATATACCTCGTT-TGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTG 176052 || ||||| ||||||| || || |||||| || || | || |||||||||||||| Sbjct 169039 GTGAAGATGTACCTCGGGCTGGCACT-ATCCTTTCCGCCGGTCAGGCGCGTACCAAACTG 169097 Query 176053 ACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGAC 176112 || | ||| | || || ||||| ||||| || | ||| | | ||||| |||| Sbjct 169098 GCCGCCCGGATACAGCAGGTTGATGTTGTTGCTGCCGACGTAATTCTGCGCCAGGTTGAT 169157 Query 176113 AATCGTGTCCGCGAGAGAGACT--TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAAT 176170 || ||| || |||| |||| ||||||||||||||||| ||| ||||| || || Sbjct 169158 GATGGTG-GAGC-AGAGCGACTGCTCACCGTGGTGGTACGCCGACTTTTCTGCCACCGAT 169215 Query 176171 GCCGCCAACTGCGCCACTTTCATCTC 176196 | |||| ||| ||||| |||| ||| Sbjct 169216 CCAGCCAGCTGGGCCACCTTCACCTC 169241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620561057867120