Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq59 114 2e-20 seq72 104 3e-17 >seq59 Length=1145648 Score = 114 bits (126), Expect = 2e-20 Identities = 304/461 (66%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 ||||| ||||||||||| |||| | | ||| || || ||||| || || | ||| Sbjct 141357 GCCAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTC 141416 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || | ||| || || || | | ||||| |||||| || |||| || | Sbjct 141417 AGCTTTTGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATG 141476 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA--- 106345 || |||||||| | ||| || || ||||| ||||| || || ||| | ||| Sbjct 141477 CCCTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAG---CGCTTCGCCTCCGGT 141533 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 || ||||| | ||| | || || | | ||| ||||| || | |||||| | || Sbjct 141534 ACTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACA 141593 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 || | || || || | || | || ||| | || ||| || | || ||| Sbjct 141594 TCCTTCAGCTTGGCAAAGTCGTACGTTTT-GTCCGGT--TTCACAAACATGTTCAGCGCG 141650 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || ||||||||||| || || | |||||||| | |||||| | || || ||| Sbjct 141651 ATCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTACTCCACTATCTCGGTA 141710 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 |||| ||||||| ||| || || || | |||| || || ||||| |||||||||| Sbjct 141711 CACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCA 141770 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 |||||||| |||||||| || ||||| ||| ||| || Sbjct 141771 TCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGA 141811 >seq72 Length=881775 Score = 104 bits (114), Expect = 3e-17 Identities = 240/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| ||||| || |||| || ||| || ||||| || | || || || Sbjct 354536 CCGCTTCTACCAAGCGTCCACCTCGGAACTGTACGGCAAGGTGGCTGAAACGCCGCAGAA 354477 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 7017 ||| ||||||| |||||||||||||| |||| ||||| | | ||| | | Sbjct 354476 CGAAAAGACACCGTTCTACCCACGCTCACCGTACGCCTGTGCAAAGATGTACGG-TTACT 354418 Query 7018 GGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCA 7077 || | || | ||| || ||||| | ||| |||| || ||| ||| ||||| |||| Sbjct 354417 GGATTGTGATAAACTATCGCGAAGCGTACAACATGTTCGCCTGCAACGGGATCCTTTTCA 354358 Query 7078 ACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC--GAGGGTAT 7135 |||| ||||||||| | ||||| | | |||| || ||| ||||| ||| ||| Sbjct 354357 ACCACGAATCACCGCGCCGAGGAGAAAACTTCGTTACACGCAAGATCACCCGTTCGGTTG 354298 Query 7136 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 7195 | || | || | || | | |||| | | || ||||||| | || || || | Sbjct 354297 CGAAGATTTC--GCTCGGACAGCAAGAGTACCTGGAGCTGGGTAATCTGGACTCGAAGCG 354240 Query 7196 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGA 7252 || ||||| ||||| || ||||| || ||||| |||||||| ||| | || || || Sbjct 354239 TGACTGGGGCCACGCCAAAGACTACGTGGAAGCGATGTGGCTGATGATGCAGCAGGA 354183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589808444484040