Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq57 129 1e-24
seq1 129 1e-24
seq20 120 7e-22
seq6 116 8e-21
>seq57
Length=1190389
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| || || || ||||| || || || || ||||| ||||| || | || || |
Sbjct 631306 GAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCG 631365
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
||||| || |||||||| || |||||||| || || || || ||||||||||| |||||
Sbjct 631366 ACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTC 631425
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || || || || ||| || ||||| || ||||||||| || || ||||| ||
Sbjct 631426 CTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGT 631485
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || | ||||| ||||| | |||||
Sbjct 631486 GATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524
>seq1
Length=5975090
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || ||||| || || || || || || || | || || | ||||||||
Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| || || || || ||||| || || || || ||||| |||
Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5042795
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || ||||| |||||||| || || || |||||||| | ||||||
Sbjct 5042794 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTT 5042735
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||| || ||||| | ||||||
Sbjct 5042734 CCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706
>seq20
Length=2346360
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || || ||||| |||| ||||| | ||||| || |||||
Sbjct 834769 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTG 834828
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||||||||| || || ||||| || || ||
Sbjct 834829 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTT 834888
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| |||||||| || |||||||| || || || || || | ||||| || ||
Sbjct 834889 AGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGT 834948
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 834949 CAGCGTCTTCACGAAGATCTGCAT 834972
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | ||| | ||| || || ||||| || || || ||||| |||| ||||| |
Sbjct 834299 AGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGA 834358
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || || |||||||| || |||||||| | || || || ||||||||||| || ||
Sbjct 834359 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCC 834418
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||| |||||||| || |||||||| || || || || ||
Sbjct 834419 TTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTG 834478
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || ||||| | |||||
Sbjct 834479 ATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
Score = 116 bits (128), Expect = 8e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || || ||||| |||| ||||| | || || || |||||
Sbjct 834541 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTG 834600
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||||||||| || || ||||| || || ||
Sbjct 834601 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTT 834660
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| |||||||| || |||||||| || || || || || | ||||| || ||
Sbjct 834661 AGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGT 834720
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 834721 CAGCGTCTTCACGAAGATCTGCAT 834744
>seq6
Length=4219845
Score = 116 bits (128), Expect = 8e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || ||||| || ||||| || || || ||||| |||| || || | || || ||
Sbjct 2100937 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 2100996
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| || || || || || || || ||||| || ||||| ||
Sbjct 2100997 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGG 2101056
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || ||||| || || ||||| || || ||||| |||| |||||
Sbjct 2101057 ATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTCTTA 2101116
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||||| ||||| | |||||
Sbjct 2101117 CCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109149375789557
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |