Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 129 4e-25 seq6 98.7 6e-16 seq20 91.5 1e-13 seq57 89.7 3e-13 >seq1 Length=5975090 Score = 129 bits (142), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||||||||| ||| | || |||| |||||||| || |||||||| Sbjct 5043125 TTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 5043066 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| |||| | ||||||||||| |||||| || || | Sbjct 5043065 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--A 5043008 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | |||||| |||| ||| ||||| ||||| || |||||||| Sbjct 5043007 TTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTG 5042948 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 5042947 ACGAAGATCTGCAT 5042934 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||||||||| ||| | || |||| |||||||| || || ||||| Sbjct 5043353 TTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 5043294 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| |||| | ||||||||||| |||||| || || | Sbjct 5043293 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--A 5043236 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | |||||| |||| ||| ||||| ||||| || |||||||| Sbjct 5043235 TTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTG 5043176 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 5043175 ACGAAGATCTGCAT 5043162 Score = 111 bits (122), Expect = 1e-19 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||||||||| ||| | || |||| |||||||| || || ||||| Sbjct 5042897 TTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAA 5042838 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| |||| | ||||||||||| |||||| || || | Sbjct 5042837 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--A 5042780 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | |||||| || | ||| || || ||||| || |||||||| Sbjct 5042779 TTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTG 5042720 Query 34968 ACAAAGATCTGCATATT 34984 || ||||| ||||| || Sbjct 5042719 ACGAAGATTTGCATGTT 5042703 >seq6 Length=4219845 Score = 98.7 bits (108), Expect = 6e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| | || |||||||| || ||||| || Sbjct 2100955 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAG 2101014 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || |||| | ||||||||||| |||||| || || || Sbjct 2101015 ATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 2101072 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || | ||| || || | || ||||| || |||||||| || || | Sbjct 2101073 TCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGA 2101132 Query 34969 CAAAGATCTGCATATTCGTA 34988 | ||||||||||| || ||| Sbjct 2101133 CGAAGATCTGCATCTTGGTA 2101152 >seq20 Length=2346360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 834536 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 834595 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 834596 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834655 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 834656 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834715 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| |||||||||||| Sbjct 834716 CCAGTCAGCGTCTTCACGAAGATCTGCATA 834745 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 834764 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 834823 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 834824 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834883 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 834884 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 834943 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 834944 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || || ||||| ||||| ||||| || || | || | || || Sbjct 834307 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTC 834366 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 834367 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 834426 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 834427 GATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 834486 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| |||||||||||| Sbjct 834487 GCCAGTCAGCGTCTTCACGAAGATCTGCATA 834517 >seq57 Length=1190389 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| |||||||| ||| | || |||| |||||||| || ||||| || Sbjct 631333 TTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 631392 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || ||||| || ||||| || || | Sbjct 631393 GATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCAC--A 631450 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || | ||| || || | || ||||| || || ||||| || ||| Sbjct 631451 TTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTC 631510 Query 34968 ACAAAGATCTGCAT-ATTC 34985 || || |||||||| |||| Sbjct 631511 ACGAAAATCTGCATGATTC 631529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324541133292888