Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 4e-15 >seq24 Length=2206587 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| || ||||||| || || ||||||||||| | ||||||||| || |||| Sbjct 1947553 AGATACTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGC 1947612 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | ||| ||||| || || | || || | |||||| || || ||| Sbjct 1947613 TCGTTCGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA 1947672 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| ||||| || || || ||||| || || | | || ||| | Sbjct 1947673 AAGCTGCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAG 1947732 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 |||| | || | ||||| || || ||||| || |||||||| || || || || Sbjct 1947733 TTAGCCTTCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGT 1947792 Query 19183 ATTGTCTCTATAGAATTAAATAG 19205 | || || || | |||||| || Sbjct 1947793 AGCGTTTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561944586940440