Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq57 114 1e-20
seq1 96.9 3e-15
seq20 91.5 1e-13
>seq57
Length=1190389
Score = 114 bits (126), Expect = 1e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||||||||| || || || ||||| || | | || | |||| |||| ||
Sbjct 631321 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCATCCTCCAGCTG 631380
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || || | |||||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 631381 CTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTT 631440
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||||| || | || || ||||| |||| || ||||||||
Sbjct 631441 GGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 631500
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473
| ||||| || || ||||||||| ||
Sbjct 631501 GAGTGTTTTCACGAAAATCTGCATGATT 631528
>seq1
Length=5975090
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/188 (72%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344
|| ||||||||||| | ||| | | |||| ||||| || || || |||||||| | |
Sbjct 5040491 TGAATATTGTAATCCGATATAATCCGACCATCTTCCAACTGTTTGCCAGCAAATATGATA 5040432
Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC---T 101401
||||| || || || ||| ||||| ||| | | ||||||||| ||| ||
Sbjct 5040431 CGCTGCTGGTCCGGTTCAATACCTTCGCGTTCTAGGA--TTTTGTTTT-TAATGTCCAAA 5040375
Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461
|| || || |||| | || |||||||||| |||||| |||||||| ||||| || ||
Sbjct 5040374 ACCGTCTCTGACGCGACAACATCAAGAGTGATCGTTTTTCCGGTTAATGTTTTCACGAAG 5040315
Query 101462 ATCTGCAT 101469
||||||||
Sbjct 5040314 ATCTGCAT 5040307
>seq20
Length=2346360
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || || ||||| || || || || || ||||| |||| | ||| | | || ||
Sbjct 834307 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTC 834366
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
|| ||||| || || || ||||||||||| ||||| || ||||| || || || || ||
Sbjct 834367 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 834426
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || || || | || | ||||| |||| || || || || |||| || ||
Sbjct 834427 GATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 834486
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||| || | || || || || ||||||||
Sbjct 834487 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | || || || ||||| || || || || || ||||| ||||
Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | || |||| ||||| || || || ||||||||||| ||||| || |||
Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || || || || || || || | || | ||||| |||| || ||
Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || ||||| || | || || || || ||||||||
Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | || || || ||||| || || || || || ||||| ||||
Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | |||| |||| ||||| || || || ||||||||||| ||||| || |||
Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || || || || || || || | || | ||||| || | || ||
Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || ||||| || | || || || || ||||||||
Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396165526413447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |