Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq29 105 9e-18 >seq29 Length=2074802 Score = 105 bits (116), Expect = 9e-18 Identities = 186/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCG 197082 |||||||| ||| ||| || ||||||||||| || || | || ||| | ||| || Sbjct 1419188 AGATCCTCATCGGAAAACCCGGTACCGATCTTGCAGATCGTTTGATACTCTTCGTTCTCA 1419129 Query 197083 GGATTGTAACAGGCGAGTAAGAAAG-CGCCGTAGGTTCCCGTTCTCTTTC--CCACCCCG 197139 | ||| ||||| || |||||| ||||||| ||||| || | ||||| | ||||| Sbjct 1419128 TCGTCGTAGCAGGCCAG-CAGAAAGCCGCCGTACGTTCCGGTACGCTTTCCACGTCCCCG 1419070 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | | |||||||| || |||| ||| || | |||| ||| || || ||| || ||| Sbjct 1419069 --GTAACCTCCGATTACGACCAAATCGAGCGAATCGCCCACACCGGTCAGGTAGTCCTTC 1419012 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGT-CCAG 197258 || || || |||||| | | |||| || || || ||||| || || || ||| | || Sbjct 1419011 TTAAGCTTCAGCCAGTTGCGCGATCGTTTCGCGATTTCGTACGTCGC-TTCGCGTGCAAG 1418953 Query 197259 GGTCTTGATCATCAATCCCTCGCA 197282 || || | |||||| ||||| || Sbjct 1418952 AGTTTTCACCATCAAACCCTCACA 1418929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676531901906480