Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq65 132 4e-26
seq6 105 5e-18
seq20 93.3 3e-14
seq1 84.2 2e-11
>seq65
Length=973771
Score = 132 bits (146), Expect = 4e-26
Identities = 211/303 (70%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT 9050
||| || || ||||| || || || |||||| | ||||| | ||||| || || |
Sbjct 654926 TTAGTTGGTGCCGGTCGATCCGAAACCTCCCGCACCGCGCTCCGTGTCCGTTAGCGACGG 654985
Query 9051 AACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCC 9110
|| |||| |||| ||||| || | || ||||| || || || || | || ||
Sbjct 654986 AAGCTCTTCCAGGTCAGGATAGGCAATCTTCTCGCAAATAAACTGTGCGATACGATCGCC 655045
Query 9111 CTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCT 9170
||| ||||| | || || | || | |||||||||||||| || || || || || |
Sbjct 655046 CTTCTTCACTTCGAAATCCGCCTCAGCGTGATTGAACAGCACGACGCCAACATTGCCGCG 655105
Query 9171 GTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGA 9230
||| |||||||||| || || || || ||||||||||| | || || || | || ||
Sbjct 655106 GTAGTCCTCATCGACGACGCCGGCTCCAACGTCGATGAAATTTTTCACGGCCAACCCGGA 655165
Query 9231 GCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGAC 9290
|| || || | || ||||||||||| | || | |||||| | | ||||||||| ||
Sbjct 655166 ACGTGGAGCTACCCGTCCGTAGCATCCTTCGGGCACCTGCACCTGGATGTCGGTCATCAC 655225
Query 9291 CAG 9293
|||
Sbjct 655226 CAG 655228
>seq6
Length=4219845
Score = 105 bits (116), Expect = 5e-18
Identities = 167/238 (70%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||| ||| || || ||| || || || ||||| || |
Sbjct 2100917 CGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2100976
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || |||| |||| |||||||||||| || ||||| ||||| ||||||| |
Sbjct 2100977 ACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCG 2101036
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | |||||||||||| ||||| || ||| | | | || || | ||| |
Sbjct 2101037 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGA 2101096
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775
|||| | ||||| || || ||||| | ||||| || || ||||||||| || ||||
Sbjct 2101097 CCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG-GTAC 2101153
>seq20
Length=2346360
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || ||||| || || ||| | ||| |||| |||
Sbjct 834308 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCC 834367
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| ||||| ||||| | |||| |||||||||||
Sbjct 834368 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834427
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || |||| ||| ||||||| ||| || || ||
Sbjct 834428 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834487
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || || || ||||||||
Sbjct 834488 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || ||||| || || ||| | || |||| |||
Sbjct 834536 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 834595
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| ||||| ||||| | |||| |||||||||||
Sbjct 834596 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834655
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || |||| ||| ||||||| ||| || || ||
Sbjct 834656 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834715
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || || || ||||||||
Sbjct 834716 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || ||||| || || ||| | ||| | || |||
Sbjct 834764 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 834823
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| ||||| ||||| | |||| |||||||||||
Sbjct 834824 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834883
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || || | ||| ||||||| ||| || || ||
Sbjct 834884 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 834943
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771
|| |||| || || || || ||||||||| |||
Sbjct 834944 CCAGTCAGCGTCTTCACGAAGATCTGCATCCTGT 834977
>seq1
Length=5975090
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || ||| || || || || || || || || || | || | || |||
Sbjct 5043142 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043083
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| |||||||| ||||| ||||| ||||| | || | ||||||||||| |
Sbjct 5043082 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043023
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| ||||| | || || || |||
Sbjct 5043022 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5042963
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| ||| || || || ||||||||
Sbjct 5042962 CCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380829095995833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |