Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq59 199 7e-46 seq24 131 3e-25 seq92 109 1e-18 >seq59 Length=1145648 Score = 199 bits (220), Expect = 7e-46 Identities = 754/1159 (65%), Gaps = 68/1159 (6%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 ||| || |||| || | ||| || || || || || || | || | ||||| ||| || Sbjct 141074 CAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGA 141133 Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 ||||| || |||| | ||||||||| |||| || ||||| || || || ||||| Sbjct 141134 CGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCAT 141193 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGC 213079 || |||| ||| || || | | ||||||| | || | | ||| || Sbjct 141194 CGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGC 141253 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||| | ||| | ||| ||| |||||| |||||||| || |||||| ||| Sbjct 141254 CCAATTCCAAAGATCCGAC-GGT-----TCCTTC---TTCCACATTTCGTACTGCAGGAT 141304 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||| || || || || | ||| | ||| || || | ||||| ||| Sbjct 141305 GCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| ||| | || || |||||||||| ||||| || || | ||| ||||| | Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 213260 GGCCTC------TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCC 213313 |||||| | | ||| || |||||| ||| ||| |||| |||| || Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATG------AACGCATCGGCCATGCC 141478 Query 213314 CTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACT---CCTCC-- 213368 ||| || ||||| ||||| || ||||| | || ||| ||||| || ||||| Sbjct 141479 CTGAACACCGATACCGATCGGCCTGTGCCGCATGTT------GGAGCGCTTCGCCTCCGG 141532 Query 213369 -AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 | || || |||| ||||| || ||||| || ||||| || | || | ||| Sbjct 141533 TACTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGAC 141592 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG---CACAAACTCAGGCAG 213484 || ||| || | | || |||| |||| | ||||||| ||| Sbjct 141593 ATCCTTCAG---CTTGGCA---AAGTCGTACGTTTTGTCCGGTTTCACAAACATGTTCAG 141646 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGAT 213541 ||||| ||||| ||||| || || | | |||| || | |||||||| || Sbjct 141647 CGCGATCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGAC---GAGTACTCCACTAT 141703 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 |||||| ||||| ||| || |||||||| | |||||| || || ||| ||| | Sbjct 141704 CTCGGTACACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTT-GCGGT 141762 Query 213602 GGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCT 213660 ||| | ||||||||| |||||||| || || || || | ||| || | | || Sbjct 141763 TGCACGCATCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGAT-- 141820 Query 213661 GGCT--CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGT 213717 ||| ||| |||| |||| ||||| ||| || | | | | | | | ||||| Sbjct 141821 GGCAAACCATAGGT-CCTGTGCCTTCACCTGGCGTATAA-ATCGACCCTCCTG--CTCGT 141876 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAGGA- 213775 || ||| |||| | ||| || | |||||| | | | ||| ||| || ||| Sbjct 141877 ACCCAGTGTACAGCTTCTCGAACTCTTCGCCCCAAGTGTCAG-CCAATCCGGGGCAGTCG 141935 Query 213776 TGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCG 213834 || ||| ||||| |||||||| ||| | ||| || | |||||||||||| |||| Sbjct 141936 TGTGGG-CACATCAGGCTCCACATTTCGTTCGCCTCC-ACACGCTGCATGAACAGATCCG 141993 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 ||| |||||| ||| ||||| ||| | || | | ||| ||| || | |||||| Sbjct 141994 GGATCCACAGGGCGTAGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCT 142053 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 |||||| ||||| || || || ||| ||||||| || || | ||||||||||||||||| Sbjct 142054 TCAGATCCAGAAACTCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGC 142113 Query 213955 CCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGA 214011 | |||| | ||||| ||||| ||||| || |||| ||||| | | |||||| | Sbjct 142114 CGGGCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCA 142173 Query 214012 CGGGTACCAGCCCGTTGGA 214030 || |||| |||||| || Sbjct 142174 TCGGCACCAACCCGTTCGA 142192 >seq24 Length=2206587 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || |||||| || || | ||||| || ||||||| || ||| |||| |||||| Sbjct 1947567 CAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGT 1947626 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||||| ||||| | || | || ||||||||||| || | ||| || ||| ||| Sbjct 1947627 AAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTGCCGCTGAA 1947686 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 |||||| ||||| || || || || ||| | | ||| || || ||| |||||| Sbjct 1947687 GAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCCTTCTTGCT 1947746 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||| |||||||||||||||||||||||| | ||| || | ||| || ||||| Sbjct 1947747 CGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCGATGGC 1947806 Score = 102 bits (112), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||||||| ||| || ||||| || || |||||||| ||||||||| | ||||| Sbjct 1947949 GTACATCTCACTGTGGACGTTCTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1948008 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||| || | ||| | || | ||||||||| || || || || || || Sbjct 1948009 CGTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGATTCTCGTTCACGATACCGTCGGA 1948068 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| || || || | ||||| || ||| | | | || | | Sbjct 1948069 CGCGGCAAAGAAGGCCAGCACGTGCGAGATAAAATGACGTTCGCTCGGTTTTAGCGAGTC 1948128 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| ||| | ||| || ||||| || |||||||| |||||||| || || Sbjct 1948129 CCAGTCCTTCATGTCCTTCGATAGGTCTACCTCTTCCACGGTCCAGAACGATGC 1948182 >seq92 Length=619269 Score = 109 bits (120), Expect = 1e-18 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 |||||||||| || |||||||||||| || ||||||||||| |||| ||| |||| || Sbjct 539501 CTCCTCCAGCTTCGAGATGCGTTCCAGCTTCCGCCGGCGGCACTTGGAGGCGGCCACCCG 539442 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||| | | ||| |||||| ||||||||| ||||| ||||| ||||||||| Sbjct 539441 GTTCCGCAACCGCTTCCGTTCCAGCTTGATGCGCTCCTGCGATTCCATATCGATCGGA 539384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931260664336640