Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq59 212 1e-49 seq24 147 4e-30 >seq59 Length=1145648 Score = 212 bits (234), Expect = 1e-49 Identities = 732/1126 (65%), Gaps = 32/1126 (3%) Strand=Plus/Plus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGC 221568 ||||||| ||||| || ||||||||||| |||||||| | | ||||||| ||| ||| Sbjct 141468 TCGGCCATGCCCTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGA-GCGCTTCGC 141526 Query 221569 TTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTT 221628 || || || ||||| |||| | ||||| | ||||| || || | || | | || Sbjct 141527 CTCCGGTACTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTT 141586 Query 221629 AACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTC 221688 | || || ||||||| || | || ||| ||| || || ||| Sbjct 141587 CGCGACATCCTTCAGCTT--GG----------CAAAGTCGTA--CGTTTTGTCCGGTTTC 141632 Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGT 221748 ||||| ||| || || | ||||| || ||||| || | || ||||| | Sbjct 141633 -ACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGA 141691 Query 221749 ATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATT 221808 |||| | ||||| ||||| || ||| ||||| ||||| || | || | ||||| Sbjct 141692 GTACTCCACTATCTCGGTACACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATT 141751 Query 221809 AGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGC 221868 |||||| ||| || |||||||| ||||| | ||| |||| || |||| ||| | Sbjct 141752 GCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGA 141811 Query 221869 CACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGG 221927 | | || ||| || || ||| || ||||| | | | | |||||| Sbjct 141812 TTCGATGATGGCAAACCATAGGTC-CTGTGCCTTCACCTGGCGTATAAATCGACCCTC-- 141868 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 || || ||||| || || ||| | || |||| ||| || | | || ||| || | Sbjct 141869 -CTGCTCGTACCCAGTGTACAGCTTCTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGG 141927 Query 221988 GACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGA 222047 | || | || |||||||| ||||| | ||| | | || | ||||||||| | Sbjct 141928 GGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACA 141987 Query 222048 GGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGT 222107 | |||||||||||||| || | || | || | || ||| ||||||| |||| ||| Sbjct 141988 GATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGT 142047 Query 222108 TTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCA 222167 ||||| ||||||||| |||||| || || || ||||||| || || || |||| ||| | Sbjct 142048 TTTTCTTCAGATCCAGAAACTCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAA 142107 Query 222168 GAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGC 222227 |||||||| ||||||||||||||||||||||| || || |||| | | || Sbjct 142108 AGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGC 142167 Query 222228 GAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGG 222287 | || |||| |||| ||||| || || || ||||| ||||||| || || Sbjct 142168 GCAGCATCGGCACCAACCCGTTCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGG 142227 Query 222288 CCCTCAGGTTACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 | | | | | || | || |||||||| ||||| ||| || |||| || || Sbjct 142228 CGCGAATG-CAGTGCACGTTCAGCCCGATACCGCCGGCCGATTTGGAAATCAGTGCACAC 142286 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406 ||| || || || || ||||| ||| ||| ||| | | | |||||||| ||| Sbjct 142287 TGCTTTAGCGTATCGTAAATACCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAA 142346 Query 222407 GACGACATCTGAGATTTGGTG-GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 ||||| | ||| | | || | | ||| ||||| || || ||| || ||||| Sbjct 142347 GACGAAAGCTGCG-GACGCTGCGTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAA 142405 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 ||||| | || | ||||| ||||||||| | | | | |||| || |||||||| Sbjct 142406 GTAGCGCTCGGAAAGCAGATTGTACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAAT 142465 Query 222526 CTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA---GGACCCTTGGAGCT 222582 ||||| | ||| ||||| || || | ||||||| |||||| || || Sbjct 142466 ACCGATGGCAACGCGCATCAGCATGTGTTGCGGTCGCTCCACAATCTTACCCTT-GATCT 142524 Query 222583 GGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG 222628 |||| || || ||||| || ||||| || || |||||| Sbjct 142525 --TCAGCAAATAGGAACGCTCCAGTGTTTTGAAGCCGAAATAGTTG 142568 >seq24 Length=2206587 Score = 147 bits (162), Expect = 4e-30 Identities = 189/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 |||||| || |||||| ||||||||| |||| || | |||| |||||| | Sbjct 1947824 AGAGAGTTC--CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACT 1947767 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| | || |||||| ||| ||| |||| ||||||||||| |||| || |||| Sbjct 1947766 GGGCGCTTAACTGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTG 1947707 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| || ||||| ||||| |||||||| |||||| ||||||||||||||||| || Sbjct 1947706 CTGCCGTCGAGGGTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGC 1947647 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || || ||| || |||||||| || ||||||||||| | | Sbjct 1947646 GTGGCCTTATGCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGC 1947587 Query 26015 ACAGAGATTTTGCCTGCCTG 26034 | | ||||| ||||||||| Sbjct 1947586 ATTGTGATTTCGCCTGCCTG 1947567 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| |||||| | || || | ||||||||| | | |||| || | ||| || Sbjct 1948174 CTGGACCGTGGAAGAGGTAGACCTATCGAAGGACATGAAGGACTGGGACTCGCTA---AA 1948118 Query 25572 A--GA-CGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628 | || ||| | |||||| || | ||||| |||| |||||||| || || || ||||| Sbjct 1948117 ACCGAGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTAT 1948058 Query 25629 AGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG 25688 ||||||||||||||| ||| | |||| | ||| |||||| |||||| || Sbjct 1948057 CGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTAACGGAGGCGCGCTG 1947998 Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 |||||||| |||||||| || || || || || ||| |||| |||| Sbjct 1947997 CTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAGATGTA 1947950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928573449602240