Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq31 132 3e-25 seq80 93.3 3e-13 >seq31 Length=1955281 Score = 132 bits (146), Expect = 3e-25 Identities = 364/553 (66%), Gaps = 10/553 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || || ||||| ||||| | || | || | || || Sbjct 2584 GCAGTCGGCATTGATCTCGGCACGACCTACAGCTGTGTCGGCGTGTTCCAGCACGGCAAG 2525 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||||||||| || || |||| || ||||| ||||| | || ||| Sbjct 2524 GTAGAAATCATTGCCAATGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACT 2465 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| ||||| |||||||| || | || | || || || || Sbjct 2464 GACACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTAGCGATGAACCCGACCAAC 2405 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || || || || || | ||||||| || || || || ||| || | |||| | Sbjct 2404 ACCATCTTCGACGCGAAGCGTCTGATTGGCCGCAAGTTCGACGATCCCGCCATCCAGGCC 2345 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| || ||||| || ||||| | | | || |||||| | || | | Sbjct 2344 GACATGAAGCACTGGCCGTTCGAGGTGGAATCGATCGAGGGCAAACCAAAGATTGCGGTC 2285 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | || || | || || | ||||| | | || ||||| | Sbjct 2284 GAGTACAAG--GGCGAGAAGAAGTGTTTCTTCCCGGAGGAGGTCAGCTCGATGGTGCTTA 2227 Query 474687 CCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743 |||| ||||| |||| || |||| | | ||| ||||| || || | || || | Sbjct 2226 CCAAGATGAAGGAAACGGCCGAAGCTTA---CCTGGGCAAGACGGTGACGAACGCTGTCA 2170 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || || || || || || ||||| || || || ||||| || ||||| |||| | Sbjct 2169 TTACCGTGCCCGCCTACTTCAACGATTCGCAGCGCCAGGCAACGAAGGATGCCGGAACGA 2110 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || || || || | ||||| || || || || || || ||||| | || || | Sbjct 2109 TTTCCGGGCTGAACGTGCTGCGTATCATCAACGAGCCGACGGCGGCCGCCATCGCCTACG 2050 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 2049 GTCTGGACAAGAA 2037 >seq80 Length=788890 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || ||||| || || ||||| ||||| ||||| || || || || || ||||||| Sbjct 347634 ATGCCGTCATTACCGTGCCGGCATACTTTAACGATTCCCAGCGACAGGCGACGAAAGATG 347575 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 |||| ||||| ||| | ||||| || ||| | || || ||||| || || || |||| Sbjct 347574 CGGGTCAGATTGCCGGTTTGAATGTGTTGCGTGTGATCAACGAACCGACGGCCGCGGCAC 347515 Query 474855 TTGCTTATGGTCTTGATAAGA 474875 | || || ||| | || |||| Sbjct 347514 TGGCGTACGGTATGGACAAGA 347494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267176704413908