Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 8e-14 >seq1 Length=5975090 Score = 93.3 bits (102), Expect = 8e-14 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| |||| | || | || ||||| ||||| |||||||| || | | Sbjct 5040489 AATATTGTAATCCGATATAATCCGACCATCTTCCAACTGTTTGCCAGCAAATATGATACG 5040430 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||| || ||||| ||| | ||||| ||||| | | | || Sbjct 5040429 CTGCTGGTCCGGTTCAATACCTTCGCGTTCTAGGATTTTGTTTTTAATGTCCAAAACCGT 5040370 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||||| | || || ||||| || ||||| || ||||||||||| | ||| ||||| Sbjct 5040369 CTCTGACGCGACAACATCAAGAGTGATCGTTTTTCCGGTTAATGTTTTCACGAAGATCTG 5040310 Query 172067 CAT--TTTATT-ATAAA 172080 ||| |||||| ||||| Sbjct 5040309 CATCATTTATTGATAAA 5040293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904871575831800