Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq29 132 6e-25 seq24 129 7e-24 seq90 123 3e-22 seq5 107 2e-17 seq59 102 1e-15 seq9 93.3 5e-13 >seq29 Length=2074802 Score = 132 bits (146), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| |||||||| ||||| ||||| | || Sbjct 1424080 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTTTGGATTTCGCGGGACGTGA 1424139 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| ||| || |||| ||||||| |||| | Sbjct 1424140 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCTTCGGCAGCGATGCGCTCGAAGA 1424199 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| ||| ||| || || ||| |||| Sbjct 1424200 TGTCGTTCACGAAACTGTTCATGATGCTCATCGCCTTCGAGGAAATACCGGTGTCCGGGT 1424259 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 1424260 GGACCTGCTTCAACACCTTGTAGATG 1424285 >seq24 Length=2206587 Score = 129 bits (142), Expect = 7e-24 Identities = 171/233 (73%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| | || ||||| | |||| ||||| |||| || || ||||| | Sbjct 1947581 CACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGTAAGACCCGGCATAA 1947640 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCG 869287 |||| |||||||||||||| ||||||| |||| || ||||| ||| ||||| |||||| Sbjct 1947641 GGCCACGCTTCTTGAGCCAGAAGATGGACGCA-AAGCTGCCGCTGAAGAAGATACCCTCG 1947699 Query 869288 ACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATC 869344 ||||| ||||| ||| | |||||| ||||| | || ||| |||| | |||| Sbjct 1947700 ACGGCAGCAAATGCGACCACACGCTCGCCAAAGTT----AG--CCTTCTTGCTCGAGATC 1947753 Query 869345 CACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 || || | ||||||||| ||||| ||| |||| |||| | ||| |||||||| Sbjct 1947754 CAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCGATGGC 1947806 Score = 116 bits (128), Expect = 5e-20 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| |||||| || || |||||||||||||| ||| | | |||| | || || || Sbjct 1947961 GTGGACGTTCTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCAC 1948020 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| ||||||| || |||| |||||| |||||| |||||| ||||| || || Sbjct 1948021 CTCCTGGCTGAACCGTTCGACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAA 1948080 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 ||||| |||||| |||||| || || ||| ||| | ||||| |||||| Sbjct 1948081 GGCCAGCACGTGCGAGATAAAATGACGTTCGCTCG-GTTTTAGCGAGTCCCAGTCCTTCA 1948139 Query 869814 TGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 ||| | || | ||||| ||||| || ||||||||| ||| || || |||| Sbjct 1948140 TGTCCTTCGAT-AGGTCTACCTCTTCCACGGTCCAGAACGATGCTTCAGCCT 1948190 >seq90 Length=654006 Score = 123 bits (136), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | || || ||| ||| Sbjct 184788 AAGCGCACCGACGACATCAGTTCGTGGGACGCTGACTTCCTGAAGGTGGACCAGGGCACG 184729 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| ||||||| ||||| ||||| | ||||| ||| ||||| || | | Sbjct 184728 CTGTTCGAGCTGATCCTGGCCGCGAACTATTTGGACATTAAGGGGCTGCTGGACGTGACG 184669 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | ||||| ||||||||||||||||| | || || ||||| |||||||| || Sbjct 184668 TGCAAAACCGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGACGTTC 184609 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 184608 AACATCAAGAACG 184596 >seq5 Length=4240566 Score = 107 bits (118), Expect = 2e-17 Identities = 233/346 (67%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || || ||| ||||| |||| ||| ||| |||| || |||| | || Sbjct 1887505 GGGTCCTCCGGGAGTGGGTAAGACGACGACCATTCTATGTTTGGCCCGAATCCTTCTCGG 1887446 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 || | | ||| ||||| || || || |||||||| ||||||| || |||| || Sbjct 1887445 TGCAAACTTCCGCGAAGCCGTCCTAGAGCTGAACGCGTCCAACGAGCGTGGTATCGATGT 1887386 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCC 1574073 || |||| | ||||| |||| ||| | | ||| ||||| | || || | Sbjct 1887385 GGTCCGCAGCAAGATCAAAATGTTCGCCCAACAGAAGGT-GACACTGCCCCGTGGGCGTC 1887327 Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133 | ||| | | || || ||||| || ||| || | ||| || || |||||||| |||| Sbjct 1887326 ATAAGATCGTGATTCTGGACGAAGCGGACAGCATGACGGAGGGTGCTCAGCAGGCACTGC 1887267 Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGT 1574193 || ||| ||||||| ||| |||||| || |||||||| |||| ||||| ||| Sbjct 1887266 GGCGCACGATGGAAATCTACAGCAACACAACACGCTTTGCGTTGGCTTGCAATACGAGCG 1887207 Query 1574194 CGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 | | | ||||| | | ||| ||||||||||| ||||| || Sbjct 1887206 AAAAGATTATCGAACCGATACAATCCCGCTGCGCCATGCTGCGATT 1887161 >seq59 Length=1145648 Score = 102 bits (112), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||| || ||||||| ||| | ||||| ||||| ||||| | ||||| || Sbjct 142133 CTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGA 142192 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || || ||||| | | ||| | || |||||| | |||| || | || Sbjct 142193 AATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAGCCC 142252 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||||||||| ||||| || || || ||||| || ||||| ||||| || ||||| Sbjct 142253 GATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTC 142312 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 || |||| || |||| | |||||||| ||||| Sbjct 142313 AATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGA 142351 >seq9 Length=3514595 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| || || || |||||||||||||| | || Sbjct 3055305 GCTTGGCCAGCTCACCCGGCAACAGCAGCCGGACCGCCGTCTGGATCTCGCGGGACGTGA 3055364 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| ||| ||||| |||| |||| ||| || || | | || || |||| | Sbjct 3055365 TCGTGGAGCGTTTGTTGTAGTGTGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGA 3055424 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| ||||| |||||||| ||| | ||| || ||||| |||||| | Sbjct 3055425 TATCGTTCACAAAGCTGTTCATGATGCTCATGGCCTTCGACGAAATGCCGGTGTCGGGAT 3055484 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||| ||||| ||| Sbjct 3055485 GGACCTGCTTCAGCACTTTGTAAATG 3055510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105221266293607