Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq29 132 6e-25
seq24 129 7e-24
seq90 123 3e-22
seq5 107 2e-17
seq59 102 1e-15
seq9 93.3 5e-13
>seq29
Length=2074802
Score = 132 bits (146), Expect = 6e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||| |||||||| ||||| ||||| | ||
Sbjct 1424080 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTTTGGATTTCGCGGGACGTGA 1424139
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| ||||||||| |||||||||| ||| || |||| ||||||| |||| |
Sbjct 1424140 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCTTCGGCAGCGATGCGCTCGAAGA 1424199
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || || |||||||| ||||| ||| ||| || || ||| ||||
Sbjct 1424200 TGTCGTTCACGAAACTGTTCATGATGCTCATCGCCTTCGAGGAAATACCGGTGTCCGGGT 1424259
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| | |||||||||||||
Sbjct 1424260 GGACCTGCTTCAACACCTTGTAGATG 1424285
>seq24
Length=2206587
Score = 129 bits (142), Expect = 7e-24
Identities = 171/233 (73%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228
||| |||| | || ||||| | |||| ||||| |||| || || ||||| |
Sbjct 1947581 CACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGTAAGACCCGGCATAA 1947640
Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCG 869287
|||| |||||||||||||| ||||||| |||| || ||||| ||| ||||| ||||||
Sbjct 1947641 GGCCACGCTTCTTGAGCCAGAAGATGGACGCA-AAGCTGCCGCTGAAGAAGATACCCTCG 1947699
Query 869288 ACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATC 869344
||||| ||||| ||| | |||||| ||||| | || ||| |||| | ||||
Sbjct 1947700 ACGGCAGCAAATGCGACCACACGCTCGCCAAAGTT----AG--CCTTCTTGCTCGAGATC 1947753
Query 869345 CACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397
|| || | ||||||||| ||||| ||| |||| |||| | ||| ||||||||
Sbjct 1947754 CAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCGATGGC 1947806
Score = 116 bits (128), Expect = 5e-20
Identities = 168/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694
||||| |||||| || || |||||||||||||| ||| | | |||| | || || ||
Sbjct 1947961 GTGGACGTTCTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCAC 1948020
Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754
||||| ||||||| || |||| |||||| |||||| |||||| ||||| || ||
Sbjct 1948021 CTCCTGGCTGAACCGTTCGACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAA 1948080
Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813
||||| |||||| |||||| || || ||| ||| | ||||| ||||||
Sbjct 1948081 GGCCAGCACGTGCGAGATAAAATGACGTTCGCTCG-GTTTTAGCGAGTCCCAGTCCTTCA 1948139
Query 869814 TGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
||| | || | ||||| ||||| || ||||||||| ||| || || ||||
Sbjct 1948140 TGTCCTTCGAT-AGGTCTACCTCTTCCACGGTCCAGAACGATGCTTCAGCCT 1948190
>seq90
Length=654006
Score = 123 bits (136), Expect = 3e-22
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167
|||||||||||||||||| |||||||| || || | || || ||| |||
Sbjct 184788 AAGCGCACCGACGACATCAGTTCGTGGGACGCTGACTTCCTGAAGGTGGACCAGGGCACG 184729
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
|| || ||| ||||||| ||||| ||||| | ||||| ||| ||||| || | |
Sbjct 184728 CTGTTCGAGCTGATCCTGGCCGCGAACTATTTGGACATTAAGGGGCTGCTGGACGTGACG 184669
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
||||| | ||||| ||||||||||||||||| | || || ||||| |||||||| ||
Sbjct 184668 TGCAAAACCGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGACGTTC 184609
Query 1592288 AACATCAAGTACG 1592300
||||||||| |||
Sbjct 184608 AACATCAAGAACG 184596
>seq5
Length=4240566
Score = 107 bits (118), Expect = 2e-17
Identities = 233/346 (67%), Gaps = 2/346 (1%)
Strand=Plus/Minus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954
|||||| || || ||| ||||| |||| ||| ||| |||| || |||| | ||
Sbjct 1887505 GGGTCCTCCGGGAGTGGGTAAGACGACGACCATTCTATGTTTGGCCCGAATCCTTCTCGG 1887446
Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014
|| | | ||| ||||| || || || |||||||| ||||||| || |||| ||
Sbjct 1887445 TGCAAACTTCCGCGAAGCCGTCCTAGAGCTGAACGCGTCCAACGAGCGTGGTATCGATGT 1887386
Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCC 1574073
|| |||| | ||||| |||| ||| | | ||| ||||| | || || |
Sbjct 1887385 GGTCCGCAGCAAGATCAAAATGTTCGCCCAACAGAAGGT-GACACTGCCCCGTGGGCGTC 1887327
Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133
| ||| | | || || ||||| || ||| || | ||| || || |||||||| ||||
Sbjct 1887326 ATAAGATCGTGATTCTGGACGAAGCGGACAGCATGACGGAGGGTGCTCAGCAGGCACTGC 1887267
Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGT 1574193
|| ||| ||||||| ||| |||||| || |||||||| |||| ||||| |||
Sbjct 1887266 GGCGCACGATGGAAATCTACAGCAACACAACACGCTTTGCGTTGGCTTGCAATACGAGCG 1887207
Query 1574194 CGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239
| | | ||||| | | ||| ||||||||||| ||||| ||
Sbjct 1887206 AAAAGATTATCGAACCGATACAATCCCGCTGCGCCATGCTGCGATT 1887161
>seq59
Length=1145648
Score = 102 bits (112), Expect = 1e-15
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| || ||||| || ||||||| ||| | ||||| ||||| ||||| | ||||| ||
Sbjct 142133 CTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGA 142192
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| || ||||| | | ||| | || |||||| | |||| || | ||
Sbjct 142193 AATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAGCCC 142252
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| ||||||||||| ||||| || || || ||||| || ||||| ||||| || |||||
Sbjct 142253 GATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTC 142312
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283
|| |||| || |||| | |||||||| |||||
Sbjct 142313 AATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGA 142351
>seq9
Length=3514595
Score = 93.3 bits (102), Expect = 5e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || ||| | ||| || || || |||||||||||||| | ||
Sbjct 3055305 GCTTGGCCAGCTCACCCGGCAACAGCAGCCGGACCGCCGTCTGGATCTCGCGGGACGTGA 3055364
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
||||| ||| ||||| |||| |||| ||| || || | | || || |||| |
Sbjct 3055365 TCGTGGAGCGTTTGTTGTAGTGTGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGA 3055424
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| ||||| ||||| |||||||| ||| | ||| || ||||| |||||| |
Sbjct 3055425 TATCGTTCACAAAGCTGTTCATGATGCTCATGGCCTTCGACGAAATGCCGGTGTCGGGAT 3055484
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| ||||| ||||| |||
Sbjct 3055485 GGACCTGCTTCAGCACTTTGTAAATG 3055510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105221266293607
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |