Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq59 419 2e-112 seq20 136 4e-27 seq57 131 2e-25 seq1 127 2e-24 seq6 125 6e-24 >seq59 Length=1145648 Score = 419 bits (464), Expect = 2e-112 Identities = 1175/1785 (66%), Gaps = 39/1785 (2%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || ||||||| || |||| |||| ||||| |||| |||||| ||||| || Sbjct 140735 TTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCC 140794 Query 138213 CGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 |||||| | |||||||||| || |||| | ||| ||||| || || | || ||| Sbjct 140795 CGTTTTCAGTCCCATTTTCC-AGCCGTAAAAGTGGATCGATGTCAGCTTGCCATAGTTCG 140853 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 ||| |||| |||||| |||||||| ||||||||| || || || || ||| | Sbjct 140854 GTTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAG 140913 Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 |||| ||||| | ||||| ||||||||||| || ||||| ||||| || || | Sbjct 140914 CCATCTTAATGCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTATTT 140973 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451 |||||| | | | || ||||||| |||||| | | || | || ||| Sbjct 140974 CCTTCGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTTCA 141033 Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511 |||| | ||||| || | |||| || | | ||||| ||| | |||| Sbjct 141034 TGTCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCACCT 141093 Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571 |||| || |||| | ||| || ||| ||||| |||| ||| | || || || || | Sbjct 141094 GAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGACT 141153 Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631 ||||||| |||| || || ||||| | ||||| ||||| |||| || || |||| Sbjct 141154 CGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGAAT 141213 Query 138632 TCCGTAAACCGTGAAGCTTG--ATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 | || | ||||| ||| ||| |||||| | | | ||| | ||| | ||| Sbjct 141214 TGCGGATGCCGTG--CTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAAGATCCGA 141271 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 |||| || |||||||| |||||||| | || || ||| | ||||| |||||||| Sbjct 141272 CGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGACTCCCTTCGTA 141331 Query 138750 CGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 || ||||| || | | || |||||||| |||||| || | || || |||| Sbjct 141332 CGTTTCGTACGGTCC-GTCGCGGGCGGCCAACTCACAGCTCGCTTCCAATGCTCCGTAGT 141390 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 | || |||||| ||| || || || ||| | ||||||| |||| |||||||| || Sbjct 141391 AGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCTTTCGTACGGATAGC 141450 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | || ||||||| ||||||| || || || || | |||| || | || |||| Sbjct 141451 GCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGATCGGCCTGTGCCGCA 141510 Query 138929 GATTTGA-CGCTTTTGCGGCTTCGATA--GGATAATAGTTTACATCGATGATTTTGTTTA 138985 || || ||||| || || || || ||||| ||||||| |||||| |||||||| | Sbjct 141511 TGTTGGAGCGCTT---CGCCTCCGGTACTGGATAGTAGTTTATATCGATAATTTTGTTCA 141567 Query 138986 AATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045 ||| ||| | | ||| | || ||| | |||| ||||| || | Sbjct 141568 GATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTCGTACGT------TT 141621 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 |||| || || ||||| |||| | |||||||| | ||||||||||| | Sbjct 141622 TGTC-----CGGTTTC-ACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCGCTA 141675 Query 139106 CTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 ||| | | | || ||| || || || |||| ||||| ||| |||||| || || Sbjct 141676 TTTCATCCTTCGACG-AGTACTCCACTATCTCGGTACACAGATTGGAACACTTTATGGTG 141734 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | || || |||||||| || ||||| || ||||| ||||| ||||| ||||| | Sbjct 141735 CCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGAACG 141794 Query 139225 CCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGC 139284 || |||||||| || | || || ||| | | |||| || | | || || Sbjct 141795 CCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTGCCTTCACCTGGCGT 141854 Query 139285 ACGTAAA--GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGG 139342 | |||| | | || |||||||| ||| || | ||||| ||| || | | Sbjct 141855 A--TAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCGAACTCTTCGCCCCAAG 141912 Query 139343 CGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGA 139402 ||||| | || | || | || || ||||| || ||| | ||||||||| | Sbjct 141913 TGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTTCGCCTCCA 141972 Query 139403 CGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTAT 139462 | ||| ||||||||||||||| ||||||| ||| | | || ||||| || | | Sbjct 141973 CACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGCACGCACCT 142032 Query 139463 CTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTT 139522 | ||| || |||| |||| | || || || || | || |||||||||||| Sbjct 142033 CCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATATCCCCGTGCCATGGTT 142092 Query 139523 CCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAG 139579 | || |||||||| | ||||| ||| |||||||| ||||| |||| || | | Sbjct 142093 CGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCG 142152 Query 139580 CATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGA 139639 || ||| | ||||||| ||||||| ||| ||| ||| | || || |||| |||| Sbjct 142153 TGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCCCATTCGTGC--CGGA 142210 Query 139640 TGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTT 139697 | ||| | || || | | || || || | ||||| |||||| | |||| Sbjct 142211 GATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAGCCCGATACCGCCGGCCGATTT 142270 Query 139698 GGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCAT 139757 ||| || | | || | || || ||||| ||||| || ||||||||| ||| Sbjct 142271 GGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATACTGTCGTCCGACAT 142330 Query 139758 CGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGG 139817 || | ||||||||| |||||||| ||||| | | ||| |||| ||||||| || || Sbjct 142331 GGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCCGCAAACATGGTCGG 142390 Query 139818 ACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877 || || || || | | || | || | |||||| |||||||| |||| Sbjct 142391 TGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCTCGATGGCAGCATCAAT 142450 Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 || ||||| ||||||| | || ||||||||||| ||||| Sbjct 142451 GTCTTCACCGTGAATACCGATGGCAACGCGCATCAGCATGTGTTG 142495 >seq20 Length=2346360 Score = 136 bits (150), Expect = 4e-27 Identities = 174/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||| | | |||||||||||| | || ||||| || || || || || ||||| || || Sbjct 834981 ATTTACAGGATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTC 834922 Query 24755 GAAGCCACCG-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACC 24813 || |||| || |||| | || | || || |||||||| ||||| || || || || Sbjct 834921 GA-GCCATCGGACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCC 834863 Query 24814 TCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTC 24873 ||| ||||| || ||||||||||| ||||| || |||||||||||| | | |||| Sbjct 834862 TCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTC 834803 Query 24874 AGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| ||||| || |||||||| | || |||| ||||| Sbjct 834802 CGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGG 834746 Score = 131 bits (144), Expect = 2e-25 Identities = 178/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 834516 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834457 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 834456 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 834397 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | |||| || || ||| Sbjct 834396 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAAC 834337 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG-CC 24942 || || ||||| ||||| || |||||||| | ||| | |||| || | ||||||| | Sbjct 834336 ATCCAGAAGGAGTCGACCCTGCACTTGGTTCTTCGACTTCGCG--GGGGAAACTGAGTCG 834279 Query 24943 AACGAA 24948 |||||| Sbjct 834278 AACGAA 834273 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 834744 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834685 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 834684 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 834625 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | |||| || || ||| Sbjct 834624 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 834565 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || |||| ||||| Sbjct 834564 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGG 834518 >seq57 Length=1190389 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || || || || || || | | Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || |||||||| ||||| ||||| Sbjct 631464 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 631405 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||||||| | | | |||| || || ||| Sbjct 631404 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 631345 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||||| ||||| | ||||| || Sbjct 631344 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTCCGCGGTGG 631298 >seq1 Length=5975090 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || ||||| || || || || ||||| || | ||||| | Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTG-AGCCATC 5042992 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||| || ||||| || ||||| || || ||||| Sbjct 5042993 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043052 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||||||||| || |||||||| ||| | | | |||| || ||||| Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || |||||||| || || || |||| | || |||| || ||| Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGGC 5043161 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || ||||| || || || || ||||| || | ||||| | Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTG-AGCCATC 5043220 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||| || ||||| || ||||| || || ||||| Sbjct 5043221 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043280 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||||||||| || || |||||||| ||| | | | |||| || ||||| Sbjct 5043281 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043340 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || || |||| | || |||| || || Sbjct 5043341 CATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGG 5043388 >seq6 Length=4219845 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || |||| Sbjct 2101146 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGA-GCCAT 2101088 Query 24763 CG-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || | || | || | || || |||||||| ||||| || || || || || |||| Sbjct 2101087 CGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGATC 2101028 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| ||||||| ||||| || ||||||||||| | | | |||| || || | Sbjct 2101027 AGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACA 2100968 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||| || ||||| ||||| || || ||||| | || ||||||| |||| Sbjct 2100967 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGCG 2100917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449766168039880