Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq29 178 2e-38 seq20193 149 1e-29 seq9 141 1e-27 seq166 138 2e-26 seq90 120 5e-21 seq24 113 7e-19 seq14 87.8 3e-11 >seq29 Length=2074802 Score = 178 bits (196), Expect = 2e-38 Identities = 184/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || |||||||||||| ||||||| || ||| ||| Sbjct 1424041 TGTACTTGGTGACTGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGCA 1424100 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| |||||||| ||||| ||||||| |||||| ||||||||| | Sbjct 1424101 GCAGCAGGCGGACGGCGGTTTGGATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 1424160 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| || |||| ||||||| |||| |||||||| || || ||||| Sbjct 1424161 GCGCCAGGCGGGACGCTTCGGCAGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCA 1424220 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || ||| || || ||| ||||| |||||||| | |||||||| Sbjct 1424221 TGATGCTCATCGCCTTCGAGGAAATACCGGTGTCCGGGTGGACCTGCTTCAACACCTTGT 1424280 Query 1485710 A 1485710 | Sbjct 1424281 A 1424281 >seq20193 Length=555 Score = 149 bits (164), Expect = 1e-29 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || |||||||||||| ||||||| || ||| ||| Sbjct 196 TGTACTTGGTAACTGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGCA 137 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| |||||||| ||||| ||||||| |||||| ||||||||| | Sbjct 136 GCAGCAGGCGGACGGCGGTTTGGATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 77 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| || |||| ||||||| |||| |||||||| || || ||||| Sbjct 76 GCGCCAGGCGGGACGCTTCGGCAGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCA 17 Query 1485650 TGATCGACATCG 1485661 |||| ||||| Sbjct 16 TGATGCTCATCG 5 >seq9 Length=3514595 Score = 141 bits (156), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || ||||||||||||||||| || ||||||||| ||||||| || || ||| Sbjct 3055266 TGTACTTCGTCACGGCCTTGGTACCCTCGGACACGGCGTGCTTGGCCAGCTCACCCGGCA 3055325 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || |||||||||||||||| ||||||| ||| ||||| | Sbjct 3055326 ACAGCAGCCGGACCGCCGTCTGGATCTCGCGGGACGTGATCGTGGAGCGTTTGTTGTAGT 3055385 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | || || |||| || ||||| ||||| ||||| Sbjct 3055386 GTGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCGTTCACAAAGCTGTTCA 3055445 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || || ||||| |||||| || |||||||| ||||| |||| Sbjct 3055446 TGATGCTCATGGCCTTCGACGAAATGCCGGTGTCGGGATGGACCTGCTTCAGCACTTTGT 3055505 Query 1485710 AAA 1485712 ||| Sbjct 3055506 AAA 3055508 >seq166 Length=108034 Score = 138 bits (152), Expect = 2e-26 Identities = 141/183 (77%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || |||||||||||| ||||||| || ||| ||| Sbjct 28481 TGTACTTGGTGACTGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGCA 28422 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| |||||||| ||||| ||||||| |||||| ||||||||| | Sbjct 28421 GCAGCAGGCGGACGGCGGTTTGGATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 28362 Query 1485590 GCGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||||| || | | |||| ||||||| ||| |||||||| || || |||| Sbjct 28361 GCGCCAGGCGGGACATCTTCGGCAGCGATGCGCTCGGAGATGTCGTTCACGAAACTGTTC 28302 Query 1485649 ATG 1485651 ||| Sbjct 28301 ATG 28299 >seq90 Length=654006 Score = 120 bits (132), Expect = 5e-21 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||||||||| |||||||| | ||| |||| ||||| | Sbjct 184791 GAAAAGCGCACCGACGACATCAGTTCGTGGGACGCTGACTTCCTGAAGGTGGACCAGGGC 184732 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || ||| ||||||| ||||| ||||| | ||||| ||| || || || || Sbjct 184731 ACGCTGTTCGAGCTGATCCTGGCCGCGAACTATTTGGACATTAAGGGGCTGCTGGACGTG 184672 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||| |||||||| ||| | ||||||||||| | || || || || |||||||| Sbjct 184671 ACGTGCAAAACCGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGACG 184612 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 184611 TTCAACATCAAGAACG 184596 >seq24 Length=2206587 Score = 113 bits (124), Expect = 7e-19 Identities = 139/185 (75%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAA 794435 || || ||||| ||||| |||||||||||||| ||||||| | || || ||||| ||| Sbjct 1947628 AGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA-AAGCTGCCGCTGAA 1947686 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||| ||||||||||| ||||| |||| | ||||| || ||||| ||| || Sbjct 1947687 GAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTC-GCCAAAGT----TAGCCTTC 1947741 Query 794496 TT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553 || | |||||| || | |||||| |||||||| ||| |||| | || | ||| ||| Sbjct 1947742 TTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCG 1947801 Query 794554 ATGGC 794558 ||||| Sbjct 1947802 ATGGC 1947806 >seq14 Length=2766867 Score = 87.8 bits (96), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 |||||||| || ||| | |||| |||| |||||| ||| | || |||||||| Sbjct 788198 AGATCAATTTTCGAGTCCTCCTCACTGGACGACATCTTTCCGCC---GGCCAGGCCCGGA 788254 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 | || ||||| | || || ||||||||| ||| |||||| ||| |||| | Sbjct 788255 ATCATTGGGTTCATTAGATGAATGCGCTTGGCGTATCCCAGCTGCGGAAGGTACTTCTCA 788314 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 || |||| || || || ||||| || || |||||||||||||| || | || | | Sbjct 788315 GCGAAGGTGAAAATTTTTCGCTGATCAACACCTCCAAACTGGGCGTCCACCTTCAGATAC 788374 Query 2411563 TGCTCGTCGAGGGCCTGCA 2411581 | |||||| || ||||||| Sbjct 788375 TCCTCGTCCAGCGCCTGCA 788393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913760320134869