Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6 141 6e-29 seq1 140 2e-28 seq57 127 1e-24 seq20 122 6e-23 >seq6 Length=4219845 Score = 141 bits (156), Expect = 6e-29 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 2100934 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 2100993 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| || |||| | ||||||||||| Sbjct 2100994 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC 2101053 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | ||| |||||| |||| || ||| Sbjct 2101054 TGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGATGG-CTCGACCTCAAGAGTAATG 2101110 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || ||||||||||| Sbjct 2101111 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq1 Length=5975090 Score = 140 bits (154), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | |||| |||||||| |||||||||||||| ||| |||| |||| Sbjct 5043145 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043086 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| || ||||| ||| |||| | ||||||||||| Sbjct 5043085 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043026 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 5043025 TGAATCTTGGCCTTCAC--ATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGG 5042968 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || || ||||| || |||||||||||| Sbjct 5042967 TCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 134 bits (148), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | |||| |||||||| |||||||||||||| ||| |||| |||| Sbjct 5043373 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043314 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| || ||||| ||| |||| | ||||||||||| Sbjct 5043313 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043254 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 5043253 TGAATCTTGGCCTTCAC--ATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGG 5043196 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || || ||||| || |||||||||||| Sbjct 5043195 TCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | |||| |||||||| |||||||||||||| ||| |||| |||| Sbjct 5042917 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5042858 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| || ||||| ||| |||| | ||||||||||| Sbjct 5042857 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5042798 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || |||| ||| || | Sbjct 5042797 TGAATCTTGGCCTTCAC--ATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAG 5042740 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || || ||||| || ||||| |||||| Sbjct 5042739 TCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATG 5042705 >seq57 Length=1190389 Score = 127 bits (140), Expect = 1e-24 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| |||||||||||||| |||||||| ||| |||| |||| Sbjct 631312 CAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCATC 631371 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||| ||| | || | || ||||| || Sbjct 631372 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATC 631431 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | |||||| |||| || ||| Sbjct 631432 CTGGATCTTGGCCTTCAC--ATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 631489 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| || ||||| || || || || ||||||||||| Sbjct 631490 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 631527 >seq20 Length=2346360 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 834761 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCC 834820 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 834821 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 834880 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | || |||||| Sbjct 834881 TGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTC 834940 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 834941 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || | || | || Sbjct 834533 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCC 834592 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 834593 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 834652 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | || |||||| Sbjct 834653 TGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTC 834712 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 834713 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || | || Sbjct 834305 AGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCC 834364 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 834365 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 834424 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | || |||||| Sbjct 834425 TGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTC 834484 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 834485 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325600031596649