Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq20 138 2e-27
seq57 129 1e-24
seq1 125 1e-23
seq68 102 2e-16
>seq20
Length=2346360
Score = 138 bits (152), Expect = 2e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | || ||| || || |||||||| || || || ||||| || || || || |
Sbjct 834516 TACCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 834575
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||||| || || || ||||| || ||||| | | || ||||||||||
Sbjct 834576 ACAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 834635
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| || || || || || ||||| || || || |
Sbjct 834636 GAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGA 834695
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| |||| |||||| || || ||||||||
Sbjct 834696 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
Score = 138 bits (152), Expect = 2e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | || ||| || || |||||||| || || || ||||| || || || || |
Sbjct 834744 TACCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 834803
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||| || || || || ||||| || ||||| | | || ||||||||||
Sbjct 834804 ACAGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 834863
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| || || || || || ||||| || || || |
Sbjct 834864 GAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGA 834923
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| |||| |||||| || || ||||||||
Sbjct 834924 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972
Score = 136 bits (150), Expect = 8e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| |||||||| || || || ||||| || || || || || ||| | | ||||
Sbjct 834302 CGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCG 834361
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || ||||| || ||||| | | || ||||||||||| || || |||||
Sbjct 834362 TCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTG 834421
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || || || || ||||| || || || || |||| || ||
Sbjct 834422 TCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATG 834481
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| |||||| || || ||||||||
Sbjct 834482 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
>seq57
Length=1190389
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | || || |||||||| ||||| || || || || || || | | |||
Sbjct 631310 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCA 631369
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || ||||| || | || ||||||||||| ||||||||||||
Sbjct 631370 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTA 631429
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||| || ||||| || ||| || || || | || ||
Sbjct 631430 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 631489
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|||||||| || | || || || || |||||||| |||
Sbjct 631490 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 631528
>seq1
Length=5975090
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||| || || | || || || ||||| ||||| || ||||| || |
Sbjct 5043390 TACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCG 5043331
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || || ||||||||||| || | || |||||||| |
Sbjct 5043330 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCG 5043271
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||| ||||| || |||||||| || || ||||| || || || || || || |
Sbjct 5043270 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAA 5043211
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || ||||| || |||| ||||| || || ||||||||
Sbjct 5043210 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || | || || || ||||| ||||| || ||||| || ||
Sbjct 5042932 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5042873
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||||||||| || | || |||||||| ||
Sbjct 5042872 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5042813
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| ||||| || |||||||| || || ||||| || || || || || || ||
Sbjct 5042812 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042753
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||| || |||| ||||| || || || |||||
Sbjct 5042752 TCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706
>seq68
Length=961948
Score = 102 bits (112), Expect = 2e-16
Identities = 210/310 (68%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371
|| ||| ||| |||| || ||| ||| ||||| || | || | |||||| | |
Sbjct 663612 CTGGAAGCGGCCAAAACGCACGACGATCTGTGGAACGCGGCCCAGCTGCAGATGGTGAAG 663553
Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431
|| || || |||||| | ||| | | ||||| ||||| || |||||||| || |||||
Sbjct 663552 GAGGGCAAGATGCATGGCTTTCTGCGGATGTATTGGGCGAAGAAGATACTGGAGTGGACG 663493
Query 198432 AGAACACCGGAAGACGCTTTGAGTTATAGT-ATCTATCTAAACAATAAGTACGAACTAGA 198490
| ||| || || || || | | | | |||||||| ||| | |||| || ||
Sbjct 663492 AAAACGCCCGAGGAAGCGCTC-GAAACGGCCATCTATCTGAACGACCGGTACAGTCTGGA 663434
Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550
|| ||||| ||||| ||||| || ||||||||||| || || |||| ||||
Sbjct 663433 TGGGCGCGATCCGAACGGGTACGTCGGCTGTATGTGGTCGATCGCAGGCATACACGATCA 663374
Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAA 198610
| ||||| || | | || ||||| ||||| | || ||||| |||||||| | ||
Sbjct 663373 GGGTTGGAAGGAGCGTGCGATTTTTGGCAAGATTCGGTACATGAACTATGAGGGATGCAA 663314
Query 198611 GAAAAAATTT 198620
| ||||||
Sbjct 663313 GCGCAAATTT 663304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981533200742769
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |