Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq68 105 1e-17 >seq68 Length=961948 Score = 105 bits (116), Expect = 1e-17 Identities = 211/310 (68%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 182995 CTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGA 183054 || ||| ||| |||| || ||| ||| ||||| || | || | |||||| ||| Sbjct 663612 CTGGAAGCGGCCAAAACGCACGACGATCTGTGGAACGCGGCCCAGCTGCAGATGGTGAAG 663553 Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 || || || |||||| | ||| | || ||||| ||||| || |||||||| || ||||| Sbjct 663552 GAGGGCAAGATGCATGGCTTTCTGCGGATGTATTGGGCGAAGAAGATACTGGAGTGGACG 663493 Query 183115 AGAACTCCGGAAGATGCTTTGAGTTATAGT-ATCTATATGAACAATAAGTACGAACTAGA 183173 | ||| || || || || | | | | |||||| ||||| | |||| || || Sbjct 663492 AAAACGCCCGAGGAAGCGCTC-GAAACGGCCATCTATCTGAACGACCGGTACAGTCTGGA 663434 Query 183174 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAG 183233 || ||||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 663433 TGGGCGCGATCCGAACGGGTACGTCGGCTGTATGTGGTCGATCGCAGGCATACACGATCA 663374 Query 183234 AGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAA 183293 | ||||| || | | || ||||| ||||| | || ||||| |||||| | | || Sbjct 663373 GGGTTGGAAGGAGCGTGCGATTTTTGGCAAGATTCGGTACATGAACTATGAGGGATGCAA 663314 Query 183294 GAAGAAATTT 183303 | |||||| Sbjct 663313 GCGCAAATTT 663304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903147279710560