Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq59 508 6e-139 seq57 134 1e-26 seq1 116 4e-21 seq24 113 4e-20 >seq59 Length=1145648 Score = 508 bits (562), Expect = 6e-139 Identities = 1242/1849 (67%), Gaps = 60/1849 (3%) Strand=Plus/Plus Query 147942 GCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCG 148001 || |||| || |||||||||||||||||||| || || ||||| ||| |||| | Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 148002 TGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058 || | ||| | || || || || |||| | | ||| | || ||||| || Sbjct 140826 TGGATCGATGTCA---GCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGC 140882 Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCA-T 148117 ||| || || ||||| || |||||||| ||||| | |||| || |||| | | | Sbjct 140883 GACTGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCA-CGTTTTAACCGAAAT 140941 Query 148118 CTCCCAGGCCGTCTTGTACAGC-CGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCA 148176 |||||| |||| |||||||| ||| | || | | || || ||||||| || | Sbjct 140942 CTCCCACACCGTTTTGTACAGATCGCGT-ATTTCCTTCGGTATCGATTCGATGCTTTGAA 141000 Query 148177 CCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCG---TCCGTGTATAGGTTGAGCT 148233 ||| ||| || | | ||| || || ||| || ||| | || | | Sbjct 141001 TCGATCCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCC---ACAGACCCATCG 141057 Query 148234 CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC 148293 | ||| || | | ||||| || |||||||||||||||||||||| || || |||| Sbjct 141058 CTGTCAAATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCC 141117 Query 148294 GCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 | || |||||| ||| ||||||| || ||||||||||| ||||| || || || | Sbjct 141118 GATTGTAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCG 141177 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| || || ||||| || | ||||||||| ||||| | ||| | ||| |||| Sbjct 141178 TCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTT 141237 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 | ||||| | ||||| | ||| || ||||||| | |||||||| ||||||| Sbjct 141238 TTTCCTTCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACT 141297 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT-GCGCCGCC 148532 |||| ||||| ||| | || || || ||||||| ||||||||||| ||| || Sbjct 141298 GCAGGATGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCG-GGCG 141356 Query 148533 GCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTG 148592 |||| || |||||||| || | || |||||||| || || ||| |||||| ||| Sbjct 141357 GCCAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTC 141416 Query 148593 AGCAGCGCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAG 148651 ||| ||| ||||||||||||||| ||| |||| | | ||||| ||||| | Sbjct 141417 AGCTTTTGGGCCTCCTCGCTTTCGTACGG-ATAGCGCATCAAAATGAACGCATCGGCCAT 141475 Query 148652 GCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-A 148710 |||||| || || | || || |||| ||| ||||||||| | ||| ||| | | Sbjct 141476 GCCCTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGC-CTCCGGTA 141534 Query 148711 GCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT--TGTAAT 148768 ||||||| ||| ||||| || |||| ||||||||| || | ||| | || Sbjct 141535 CTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACAT 141594 Query 148769 TCTGCGCAGCAATTCAAAATCGTAC---TTGTC--ATCTACGATGCATCGGTTCACGGCG 148823 || |||| |||| |||||| ||||| | | | ||| ||||| ||| Sbjct 141595 CCT--TCAGCTTGGCAAAGTCGTACGTTTTGTCCGGTTTCACAAACAT--GTTCAGCGCG 141650 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || ||||| | ||||||||| || | |||||| | |||||| || ||||||| Sbjct 141651 ATCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTACTCCACTATCTCGGTA 141710 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 ||||||||| || || || ||| | ||||| ||||||||||||| ||||||||| Sbjct 141711 CACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCA 141770 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGAT 149001 |||||||||||||||||||| |||| ||||||||||||| ||| | ||| || | || Sbjct 141771 TCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCAT 141830 Query 149002 GCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACA 149061 |||||||| || ||| || | | ||||||||||||||||| ||| |||| Sbjct 141831 --AGGTCCTGTGCCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACA 141888 Query 149062 GCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGA 149121 || ||||||| | ||||| | || | | |||||||| | ||| |||||||| | Sbjct 141889 GCTTCTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCA 141948 Query 149122 GCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGT 149181 | ||||| ||| ||| | ||| |||| ||| |||||||| || | ||| || |||| Sbjct 141949 GGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGT 142008 Query 149182 ACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240 | | | |||||| | | ||| || || ||| |||| ||| | || | Sbjct 142009 AGAACATGTCGCG-GGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 142067 Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTG 149297 |||||| ||| ||||||| || || | ||| | || | ||||| ||| ||| Sbjct 142068 TCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTG 142127 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 || ||||| || |||| || || ||||||| | || || | ||| || | | || Sbjct 142128 CCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCG 142187 Query 149358 CTGGCAGTGCCGTTAGT---AGAGCT-AATGCGACTGCCGCGCGCTCGCACTTTGTGCAC 149413 | | | | || || || ||| | | | || ||||| ||| |||||| Sbjct 142188 TTCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCA----GTGCAC 142243 Query 149414 GTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTA 149473 ||| | ||||| |||||| | | || || || || || | ||||| ||| Sbjct 142244 GTTCAGCCCGATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTA 142303 Query 149474 GATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA 149533 || ||||| || |||||| | |||||| ||||||||||| || | | |||||| Sbjct 142304 AATACCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACG 142363 Query 149534 ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCAT 149593 |||| ||||||| |||||||| || ||| || ||||| || || | | || Sbjct 142364 CTGCGTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAG 142423 Query 149594 CTCGTACGACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGC 149651 | ||||| ||||| ||| || || ||||| || || || || || ||||| |||||| Sbjct 142424 ATTGTACGTCTCGATGGCA-GC-ATCAATGTCTTCACCGTGAATACCGATGGCAACGCGC 142481 Query 149652 ATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCC---AATTTTGAGCAAGTAGCCG 149708 |||||||| || |||||||||| |||| | || || || || ||||| ||| Sbjct 142482 ATCAGCATGTGTTGCGGTCGCT---CCACAATCTTACCCTTGATCTTCAGCAAATAGGAA 142538 Query 149709 TTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 || ||||| ||| |||| || || ||||| | || || ||| ||| Sbjct 142539 CGCTCCAGTGTTTTGAAGCCGAAATAGTTGTACCCGAAATCACGGTCGT 142587 >seq57 Length=1190389 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| || || ||| ||| | ||||| |||| Sbjct 631321 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCA-TCCTCCAGCT 631379 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||| |||||||| || ||||| || |||||||| || ||||| Sbjct 631380 GCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCT 631439 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 631440 TGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 631499 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 631500 TGAGTGTTTTCACGAAAATCTGCATG 631525 >seq1 Length=5975090 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || || || || || ||| | | | || || |||| Sbjct 5043137 ATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCTTCCAGCT 5043079 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || |||||||| || || ||||| || |||||||| |||| Sbjct 5043078 GCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCT 5043019 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||||| ||||| || |||| ||||| ||| || |||| Sbjct 5043018 TGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGG 5042959 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||| || ||||| ||||||||| Sbjct 5042958 TCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || || || || || ||| | | | || || |||| Sbjct 5043365 ATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCTTCCAGCT 5043307 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || |||||||| || || ||||| || |||||||| |||| Sbjct 5043306 GCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCT 5043247 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||||| ||||| || |||| ||||| ||| || |||| Sbjct 5043246 TGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGG 5043187 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||| || ||||| ||||||||| Sbjct 5043186 TCAGAGTCTTGACGAAGATCTGCATG 5043161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || || || || || ||| | | | || || |||| Sbjct 5042909 ATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCTTCCAGCT 5042851 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || |||||||| || || ||||| || |||||||| |||| Sbjct 5042850 GCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCT 5042791 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||||| ||||| || || | ||||| || || |||| Sbjct 5042790 TGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTTCCGG 5042731 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||| || ||||| || |||||| Sbjct 5042730 TCAGAGTCTTGACGAAGATTTGCATG 5042705 >seq24 Length=2206587 Score = 113 bits (124), Expect = 4e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| || || || |||| |||||||| | ||| ||||||||||| || || Sbjct 1947567 CAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGT 1947626 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | ||| | |||||| |||| |||| ||||||||||| || Sbjct 1947627 AAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTGCCGCTGAA 1947686 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| ||| ||||| ||||||| |||||| | || | ||| ||||||| Sbjct 1947687 GAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCCTTCTTGCT 1947746 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||| || | ||||| || ||||| || ||||||||| Sbjct 1947747 CGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGG 1947791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483279574656040