Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq20 102 5e-17 seq6 102 5e-17 seq1 98.7 7e-16 >seq20 Length=2346360 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 834517 ACCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 834576 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| || |||||||| || |||||||||||||||||| | || Sbjct 834577 CAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 834636 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || ||| || | || | ||||| | || | Sbjct 834637 AATACCCTCCTTGTCCTGGATCTTAGCCTTC-ACGTTCTCGATCGTGTCCGACGGCTCGA 834695 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || || || | ||| || || |||||||||||| Sbjct 834696 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATA 834745 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| || || |||||||| ||||| || || || |||| ||| Sbjct 834308 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCC 834367 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || |||||||| || |||||||||||||||||| | || | ||| || ||||| Sbjct 834368 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834427 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| || | || | ||||| | || || || | |||||| || || Sbjct 834428 ATCTTAGCCTTC-ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 834486 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||| || || |||||||||||| Sbjct 834487 GCCAGTCAGCGTCTTCACGAAGATCTGCATA 834517 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 834745 ACCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 834804 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || |||||||| || |||||||||||||||||| | || Sbjct 834805 CAGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 834864 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || ||| || | || | ||||| || || | Sbjct 834865 AATACCCTCCTTGTCCTGGATCTTAGCCTTC-ACGTTCTCGATCGTGTCCGATGGCTCGA 834923 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| || || || || | ||| || || ||||||||||| Sbjct 834924 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 >seq6 Length=4219845 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| ||| || || ||| || || |||||||| ||||| Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || ||||| || |||| |||||||||||| |||| Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||| |||| || | || || || || || Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGATGGCTCGAC 2101097 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 2101098 CTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq1 Length=5975090 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || ||| || || || ||||| || || || Sbjct 5043160 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043101 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| ||||||||||||| |||| Sbjct 5043100 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043041 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| |||| || | ||||||| || || || Sbjct 5043040 ATTCCCTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCGATGGTGTCGGATGGCTCAAC 5042982 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 5042981 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || ||| || || || ||||| || || || Sbjct 5042932 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5042873 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| ||||||||||||| |||| Sbjct 5042872 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5042813 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| |||| || | ||||||| || || || Sbjct 5042812 ATTCCCTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCGATGGTGTCGGATGGCTCAAC 5042754 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| || || || || | || || || ||||| ||||| |||| Sbjct 5042753 CTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT-GTTG 5042702 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || ||| || || || ||||| || || || Sbjct 5043389 ACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5043330 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| ||||||||||||| |||| Sbjct 5043329 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGG 5043270 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || ||| |||| || | ||||||| || || | Sbjct 5043269 GATTCCCTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCGATGGTGTCGGATGGCTCAA 5043211 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||||||||| Sbjct 5043210 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328610373904320