Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq57 93.3 1e-13 seq20 87.8 4e-12 seq6 87.8 4e-12 >seq57 Length=1190389 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || ||| ||||| |||| Sbjct 631509 AAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGACACGATCGAGAAT 631450 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || | || |||||| Sbjct 631449 GTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAGCGTCTCATCTTC 631390 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| | ||||| || ||| Sbjct 631389 GCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATTCAGAAGGAATCT 631330 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || |||| || Sbjct 631329 ACCCTTCATCTGGTGCTGCGACTCCG 631304 >seq20 Length=2346360 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || ||||| |||| || || || ||||| |||| Sbjct 834501 AAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGACACGATCGAGAAC 834442 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | | |||||| Sbjct 834441 GTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTC 834382 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || || | ||| || |||| |||||| ||||||| ||||| Sbjct 834381 GCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 834322 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| | ||||||| Sbjct 834321 ACCCTGCACTTGGTTCTTCGACTTCG 834296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || ||||| |||| || || || ||||| |||| Sbjct 834729 AAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGACACGATCGAGAAC 834670 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | | |||||| Sbjct 834669 GTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTC 834610 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 834609 GCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 834550 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 834549 ACCCTGCAC 834541 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || ||||| |||| || || || ||||| |||| Sbjct 834957 AAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATCGGACACGATCGAGAAC 834898 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | | |||||| Sbjct 834897 GTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTC 834838 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 834837 GCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 834778 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 834777 ACCCTGCAC 834769 >seq6 Length=4219845 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || ||| | || || || || || Sbjct 2101142 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCATCGGAT 2101083 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 2101082 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAG 2101023 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || ||| | || || |||| |||||| || Sbjct 2101022 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATC 2100963 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 2100962 CAGAAGGAGTCGACCCTTCATCTGGT 2100937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181466914471691