Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq59 318 6e-82 seq43 100 3e-16 seq57 98.7 9e-16 seq6 93.3 4e-14 seq20 91.5 1e-13 >seq59 Length=1145648 Score = 318 bits (352), Expect = 6e-82 Identities = 1207/1860 (65%), Gaps = 52/1860 (3%) Strand=Plus/Plus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGATTG 146634 || |||||||| |||| ||| |||||||||||||| || || | ||| || | | Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 146635 TGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTT 146694 || ||||| |||| || | || |||| || |||||| | || |||||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 146695 TGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAAT-CATGCGTTTTGTCTTCATT-T 146752 ||||| || || || ||||| || ||||||| ||| || |||||| | | | | Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCA--CGTTTTAACCGAAATCT 140943 Query 146753 CCCAAGCGGTTTTGTACAGCCC-CTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 |||| | ||||||||||| | | || | || || || ||| ||| ||||||| Sbjct 140944 CCCACACCGTTTTGTACAGATCGCGTATTTCCTTC-GGTATCGATTCGATGCTTTGAATC 141002 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAAGGTTTAGTTTAAT 146870 || || |||| | | ||| || ||| | || || | | || | | Sbjct 141003 GATCCGTTGTTGGACAGAATT-TGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGT 141061 Query 146871 GAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAG 146930 | || | | | || || || ||||| ||||||||||| | || ||||| | Sbjct 141062 CAAATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATT 141121 Query 146931 ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGT 146990 || || ||| ||| | || || || ||||| || || || || ||||| ||||| | Sbjct 141122 GTAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGA 141181 Query 146991 TGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC---GCACGGATGTT 147047 ||||||||||| |||| || || ||||| || | |||| | ||| || || Sbjct 141182 AGCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCA---ATTTT 141238 Query 147048 GTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTG 147107 |||||||| ||| | ||| | ||| || | |||||||| |||||||| Sbjct 141239 TTCCTTCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTG 141298 Query 147108 GAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGC 147167 || | ||| || | ||||| || || |||| ||| ||||||||| || Sbjct 141299 CAGGATGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGC 141358 Query 147168 CAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG 147227 ||| |||||||| || || | ||||| ||||| || |||||| ||||||| ||| || Sbjct 141359 CAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAG 141418 Query 147228 GACGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAAC 147286 || || ||||| ||||| || ||| |||| | | || |||||||||| | Sbjct 141419 CTTTTGGGCCTCCTCGCTTTCGTACGG-ATAGCGCATCAAAATGAACGCATCGGCCATGC 141477 Query 147287 CCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGG 147346 |||| | ||||| ||||| || | ||| |||| ||||||||| || || | Sbjct 141478 CCTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTG 141537 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTT 147406 |||||| ||| ||| ||||| ||||| || || ||| | || || | | | Sbjct 141538 GATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCT 141597 Query 147407 TGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA---CACGTACGCATTGGTTCACGGCGA 147463 | || || | || || || || ||| || ||| || || ||||| |||| Sbjct 141598 TCAGCTTGGCAAAGTCGTACGTTTTGTC--CGGTTTCACAAAC--AT--GTTCAGCGCGA 141651 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCG 147522 | || |||| |||||| || || | || || || || ||||| ||| || |||| Sbjct 141652 TCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGA-GTACTCCACTATCTCGGTA 141710 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 ||||| ||| || |||||| || | || ||||||||||| || || |||||||| Sbjct 141711 CACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCA 141770 Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTA 147639 || ||| | ||||||||||| |||| || || || |||| ||| | ||| ||||| | Sbjct 141771 TCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACC-A 141829 Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 | |||||||| || |||| | | | | || ||||| | ||||||| |||| Sbjct 141830 T--AGGTCCTGTGCCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTAC 141887 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759 | | ||| ||||| ||||| | || || | ||||| || | || || |||||| Sbjct 141888 AGCTTCTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATC 141947 Query 147760 AGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCG 147819 || |||||| |||| ||| | || || |||| ||||||||||| | |||||| ||| Sbjct 141948 AGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCG 142007 Query 147820 TACATAAGATCGCGCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CA 147877 || | | ||||| || ||| ||||| ||| |||| |||| || || | Sbjct 142008 TAGAACATGTCGCGGGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAA 142066 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---T 147934 | | | | || || ||||||| ||||| | ||||| ||| | || || ||| | Sbjct 142067 CTCGA-ATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGT 142125 Query 147935 TTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 | || ||||| || || | || || ||||||| | ||||||| ||| || ||| | Sbjct 142126 TGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACC 142185 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 || ||| | | || || ||| ||| | | || ||| || | |||||||| Sbjct 142186 CGTTCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGT 142245 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-ATCGC-CCAATGTCGTGTA 148112 | | || || |||||| | | || || || ||| ||| | || | || ||| Sbjct 142246 TCAGCCCGATACCGCCGGCCGATTTGGAAAT--CAGTGCACACTGCTTTAGCGTATCGTA 142303 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 || || || || ||||||| | | ||||| ||| || || | | |||||| Sbjct 142304 AATACCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACG 142363 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232 | |||| | |||| || | ||| || || || ||||| | ||| | Sbjct 142364 CTGCGTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAA----GTAGCGCTCGGAAA 142419 Query 148233 GC-GA---TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 || || |||||||| || || | || ||||| || |||||||| || | || |||| Sbjct 142420 GCAGATTGTACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGC 142479 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT 148348 |||| |||||||| || ||||| || ||| | | |||||||| || | ||| | Sbjct 142480 GCATCAGCATGTGTTGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAAC 142539 Query 148349 TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || || |||||| | || || || ||||| | ||||| | |||||| |||||||| Sbjct 142540 GCTCCAGTGTTTTGAAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCG 142599 >seq43 Length=1551626 Score = 100 bits (110), Expect = 3e-16 Identities = 229/335 (68%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 51540 ACAATACCGATGATGCCGCA-GCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAG 51598 ||||| || || | ||||| ||| || ||| | || | ||||| ||||| |||||||| Sbjct 826324 ACAAT-CCAATCACACCGCAAGCCAAG-CGTGCTCCAGCATTGCCAGTGGTTTTGCTCAG 826267 Query 51599 CGGATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAAC 51658 | ||| | || ||||||||||| | | || ||||| ||||| |||||| || Sbjct 826266 CTCATGTCCTCCCAGCCCGAGATCGTCCGGATCGGCATGAACTACCAGCGAGCGGCCCAC 826207 Query 51659 GACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCAC-TTCGGTGAGGG 51717 ||| | | || |||| ||| | | ||| | |||||| |||| | Sbjct 826206 TACGTTCATCGGTCCACTCAGCGCAATCTGGCTCGCGACCAAGTCCACCTTCGCTTCAC- 826148 Query 51718 CGTTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCG-CCGCGTTC 51776 || ||| | | || ||| ||||||| ||| ||| | |||||| ||| |||| | | Sbjct 826147 CGCTGG---CGTCCGCTACGATGTTGCCCATGTCACCGGCATGGCGC-TCGTCCGCATCC 826092 Query 51777 GGAGCGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTG 51836 || || ||||| ||||| ||||||||||| |||||| ||| |||| |||||| Sbjct 826091 GGGGCACCGTGTGTTTTGCCGTGCGGGTTGAAGTGAGCGCCCGTGGACATGCAACCGTTG 826032 Query 51837 CTGGTGTCGCCGAATTCGTGCACGTGGAATCCGTG 51871 || |||| ||||| ||||| | ||||||||| || Sbjct 826031 GTGTTGTCTCCGAACTCGTGGATGTGGAATCCATG 825997 >seq57 Length=1190389 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || || || |||||||||||||| || ||| || | Sbjct 631310 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCA 631369 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| ||||||||||| || ||||| ||| Sbjct 631370 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTA 631429 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | ||||| || || | || | Sbjct 631430 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 631489 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || || || || || ||||| | |||||||||||||| Sbjct 631490 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 631526 >seq6 Length=4219845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | |||| ||| | | | ||||| || || |||||||||||| || ||| Sbjct 2100925 CGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 2100984 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| ||||||| |||| |||||||| ||||| || || ||||| Sbjct 2100985 CGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCC 2101044 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 2101045 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGA 2101104 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 2101105 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq20 Length=2346360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| || || |||||||||||| || ||||| || || Sbjct 834307 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTC 834366 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || |||| |||| | |||||| ||||||||||| || || || || || Sbjct 834367 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 834426 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | || || | |||||| || || | ||| | || || Sbjct 834427 GATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTT 834486 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | ||| |||||||| Sbjct 834487 GCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 834523 ACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 834582 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || |||| |||| | |||||| ||||||||||| || || Sbjct 834583 ACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACC 834642 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || || | |||||| || || | Sbjct 834643 CTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAG 834702 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || |||||||| || || | ||| |||||||| Sbjct 834703 CGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 834751 ACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 834810 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| | |||||| ||||||||||| || || Sbjct 834811 ACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACC 834870 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || || | ||||| || || | Sbjct 834871 CTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAG 834930 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || |||||||| || || | ||| |||||||| Sbjct 834931 CGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476471963995560