Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq59 113 4e-20 >seq59 Length=1145648 Score = 113 bits (124), Expect = 4e-20 Identities = 504/782 (64%), Gaps = 31/782 (4%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || || ||||| | ||| |||| ||||| |||| |||||||||||||||||| || Sbjct 140741 CACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTT 140800 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | ||| | | |||| ||| || || |||| || | |||| |||| ||||| Sbjct 140801 CAGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGC 140860 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 |||| | || | |||||| ||||||||| | | || ||||| || ||||| || Sbjct 140861 CACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGCCATCTT 140920 Query 136818 CAATAGTACTTTTT--GCTTAATTTCCCAAGCGGTTT--TAAAGAGCTCCT-TGACATTG 136872 ||| | || |||| | ||| ||||| | |||| || ||| | | | | | || Sbjct 140921 -AAT-GCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTATTTCCTT- 140977 Query 136873 GGCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATT---TTCATCATG 136929 ||| || ||||| | || | ||||||||||| | ||| ||| ||||| Sbjct 140978 --CGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTTCATG 141035 Query 136930 ---AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACT 136986 ||||| | || | | | ||| || | | | | ||||| || || || Sbjct 141036 TCTAGATCCCAC-AG-ACCCATCGCTGTC----AAATCTTGCAGCAGATGGTGGTTCACC 141089 Query 136987 ACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAAC 137046 || ||| | ||||| || || || | || ||| | || ||| |||| ||||| Sbjct 141090 ACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAG 141149 Query 137047 GATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAAT 137106 || |||||||||||||| || ||||| |||| || || ||||| || | || || Sbjct 141150 GACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGC 141209 Query 137107 GAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTG 137166 ||||| || | ||||| || | || || ||| | ||| ||| ||||| ||| Sbjct 141210 GAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAAGA--- 141266 Query 137167 TTCGATTGGGTT--ATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTT 137224 | ||| |||| | ||||||| || |||||| | || ||| | ||||| Sbjct 141267 TCCGA--CGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGACTCC 141324 Query 137225 CTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGC 137284 || | || | || || | ||||| | |||| ||| ||| | | ||| | Sbjct 141325 CTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTCCAATGCTC 141384 Query 137285 CATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGG 137344 | ||||| || |||||| | |||| | |||| | | || || | ||| ||||| | Sbjct 141385 CGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCTTTCGTACG 141444 Query 137345 GCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTG 137403 | ||| | || | | ||| ||||| || | || |||| |||||||||||| || ||| Sbjct 141445 G-ATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGATCGGCCTG 141503 Query 137404 TG 137405 || Sbjct 141504 TG 141505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444964371234720