Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq29 140 5e-27 seq20193 129 8e-24 seq24 129 8e-24 seq166 114 2e-19 seq9 100 4e-15 >seq29 Length=2074802 Score = 140 bits (154), Expect = 5e-27 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| ||||| |||| | ||||| || | | Sbjct 1424284 ATCTACAAGGTGTTGAAGCAGGTCCACCCGGACACCGGTATT---TCCTCGAA---GGCG 1424231 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| |||| || Sbjct 1424230 ATGAGCATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCTGCCGAAGCGTCC 1424171 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| |||||| | ||||| ||||| |||||||| Sbjct 1424170 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTC 1424111 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||||||||| || |||| Sbjct 1424110 CGCCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 1424059 >seq20193 Length=555 Score = 129 bits (142), Expect = 8e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||| || || |||||||| |||| ||||||| |||| || |||||| Sbjct 13 ATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCTGCCGAAGCGTCCCGCCTG 72 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| || |||||||||| |||||| | ||||| ||||| |||||||| |||||| Sbjct 73 GCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTCCGCCTG 132 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| ||||||||||||||| || |||| Sbjct 133 CTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 178 >seq24 Length=2206587 Score = 129 bits (142), Expect = 8e-24 Identities = 144/186 (77%), Gaps = 11/186 (6%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152 |||||||| ||| | |||| |||| ||| ||||| ||||||||| | || |||||| Sbjct 1947806 GCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAACTGGATCTCG 1947747 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 | |||| ||| | | |||||| |||||| | |||| ||||| || |||||||| | Sbjct 1947746 AGCAAGAAGG----CTA-ACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAGGGTA 1947692 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 |||| ||| ||||| || |||| ||||||| |||||||||||||| ||||| ||||| Sbjct 1947691 TCTTCTTCAGCGGCAGCTT-TGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATGCCG 1947633 Query 1456271 GGTCTT 1456276 |||||| Sbjct 1947632 GGTCTT 1947627 Score = 114 bits (126), Expect = 2e-19 Identities = 191/270 (71%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 |||| || || || || ||||||| || ||||| ||||| || | |||| | | Sbjct 1948190 AGGCTGAAGCATCGTTCTGGACCGTGGAAGAGGTAGACCTATCGAAG--GACATGAAGGA 1948133 Query 1455854 CTGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 ||||| ||||| | ||| ||| || ||||| ||| |||||| || ||||| ||| Sbjct 1948132 CTGGGACTCGCTAAAAC-CGAGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTCTTT- 1948075 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 ||||| ||| || |||||| |||||| |||| || || || | | ||||| || Sbjct 1948074 GCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAG 1948015 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | ||||| || | || ||||| |||||||| || || || ||| ||||| ||| Sbjct 1948014 GTAACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAG 1947955 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTC 1456062 | |||||||| ||||||||||| ||| || Sbjct 1947954 ATGTACTCGCTGCTGATCGACACGTACATC 1947925 >seq166 Length=108034 Score = 114 bits (126), Expect = 2e-19 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 724979 CATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC-GCCTGG 725037 ||||||| || || |||||||| ||| ||||||| |||| | | | |||||| Sbjct 28299 CATGAACAGTTTCGTGAACGACATCTCCGAGCGCATCGCTGCCGAAGATGTCCCGCCTGG 28358 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 ||| || |||||||||| |||||| | ||||| ||||| |||||||| |||||| Sbjct 28359 CGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTCCGCCTGC 28418 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| ||||||||||||||| || |||| Sbjct 28419 TGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 28463 >seq9 Length=3514595 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| |||||||| || ||| |||| ||| || ||| || Sbjct 3055509 ATTTACAAAGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATT-TCGTCGAAGGCC 3055456 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| ||||| || |||| || || | | || || Sbjct 3055455 ATGAGCATCATGAACAGCTTTGTGAACGATATCTTCGAGCGGATTGCGGCGGAAGCGTCC 3055396 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || |||||| ||| ||||||| | |||||||||||||| || || Sbjct 3055395 CGGTTGGCACACTACAACAAACGCTCCACGATCACGTCCCGCGAGATCCAGACGGCGGTC 3055336 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| || || ||||||| ||||||||| |||||||| |||| Sbjct 3055335 CGGCTGCTGTTGCCGGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGTACCA 3055284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175557024094102