Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq29 140 5e-27
seq20193 129 8e-24
seq24 129 8e-24
seq166 114 2e-19
seq9 100 4e-15
>seq29
Length=2074802
Score = 140 bits (154), Expect = 5e-27
Identities = 171/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | |||||||| ||||| |||| | ||||| || | |
Sbjct 1424284 ATCTACAAGGTGTTGAAGCAGGTCCACCCGGACACCGGTATT---TCCTCGAA---GGCG 1424231
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || || |||||||| |||| ||||||| |||| ||
Sbjct 1424230 ATGAGCATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCTGCCGAAGCGTCC 1424171
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||||| || |||||||||| |||||| | ||||| ||||| ||||||||
Sbjct 1424170 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTC 1424111
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||| | ||| ||| || ||||||| ||||||||||||||| || ||||
Sbjct 1424110 CGCCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 1424059
>seq20193
Length=555
Score = 129 bits (142), Expect = 8e-24
Identities = 128/166 (77%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036
||||||||| || || |||||||| |||| ||||||| |||| || ||||||
Sbjct 13 ATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCTGCCGAAGCGTCCCGCCTG 72
Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096
|||| || |||||||||| |||||| | ||||| ||||| |||||||| ||||||
Sbjct 73 GCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTCCGCCTG 132
Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| ||| || ||||||| ||||||||||||||| || ||||
Sbjct 133 CTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 178
>seq24
Length=2206587
Score = 129 bits (142), Expect = 8e-24
Identities = 144/186 (77%), Gaps = 11/186 (6%)
Strand=Plus/Minus
Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152
|||||||| ||| | |||| |||| ||| ||||| ||||||||| | || ||||||
Sbjct 1947806 GCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAACTGGATCTCG 1947747
Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211
| |||| ||| | | |||||| |||||| | |||| ||||| || |||||||| |
Sbjct 1947746 AGCAAGAAGG----CTA-ACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAGGGTA 1947692
Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270
|||| ||| ||||| || |||| ||||||| |||||||||||||| ||||| |||||
Sbjct 1947691 TCTTCTTCAGCGGCAGCTT-TGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATGCCG 1947633
Query 1456271 GGTCTT 1456276
||||||
Sbjct 1947632 GGTCTT 1947627
Score = 114 bits (126), Expect = 2e-19
Identities = 191/270 (71%), Gaps = 7/270 (3%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853
|||| || || || || ||||||| || ||||| ||||| || | |||| | |
Sbjct 1948190 AGGCTGAAGCATCGTTCTGGACCGTGGAAGAGGTAGACCTATCGAAG--GACATGAAGGA 1948133
Query 1455854 CTGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912
||||| ||||| | ||| ||| || ||||| ||| |||||| || ||||| |||
Sbjct 1948132 CTGGGACTCGCTAAAAC-CGAGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTCTTT- 1948075
Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972
||||| ||| || |||||| |||||| |||| || || || | | ||||| ||
Sbjct 1948074 GCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAG 1948015
Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032
| | ||||| || | || ||||| |||||||| || || || ||| ||||| |||
Sbjct 1948014 GTAACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAG 1947955
Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTC 1456062
| |||||||| ||||||||||| ||| ||
Sbjct 1947954 ATGTACTCGCTGCTGATCGACACGTACATC 1947925
>seq166
Length=108034
Score = 114 bits (126), Expect = 2e-19
Identities = 125/165 (76%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 724979 CATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC-GCCTGG 725037
||||||| || || |||||||| ||| ||||||| |||| | | | ||||||
Sbjct 28299 CATGAACAGTTTCGTGAACGACATCTCCGAGCGCATCGCTGCCGAAGATGTCCCGCCTGG 28358
Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097
||| || |||||||||| |||||| | ||||| ||||| |||||||| ||||||
Sbjct 28359 CGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTCCGCCTGC 28418
Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| ||| || ||||||| ||||||||||||||| || ||||
Sbjct 28419 TGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGAACCA 28463
>seq9
Length=3514595
Score = 100 bits (110), Expect = 4e-15
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| ||||| ||||| |||||||| || ||| |||| ||| || ||| ||
Sbjct 3055509 ATTTACAAAGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATT-TCGTCGAAGGCC 3055456
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| ||||| || |||| || || | | || ||
Sbjct 3055455 ATGAGCATCATGAACAGCTTTGTGAACGATATCTTCGAGCGGATTGCGGCGGAAGCGTCC 3055396
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| |||| | || |||||| ||| ||||||| | |||||||||||||| || ||
Sbjct 3055395 CGGTTGGCACACTACAACAAACGCTCCACGATCACGTCCCGCGAGATCCAGACGGCGGTC 3055336
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| | ||| || || ||||||| ||||||||| |||||||| ||||
Sbjct 3055335 CGGCTGCTGTTGCCGGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGTACCA 3055284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175557024094102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |