Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq20 125 6e-24
seq6 120 3e-22
seq68 118 1e-21
seq57 104 2e-17
seq1 93.3 4e-14
>seq20
Length=2346360
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || |||| ||||||||||| || || ||
Sbjct 834325 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAA 834384
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| || | ||||| | |||||||||| |||||| ||||| |
Sbjct 834385 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834444
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||||| |||||| || || || |||| || |||||
Sbjct 834445 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834504
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 834505 GAAGATCTGCAT 834516
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || |||| ||||||||||| || || ||
Sbjct 834553 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAA 834612
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| || | ||||| | |||||||||| |||||| ||||| |
Sbjct 834613 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834672
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||||| |||||| || || || |||| || |||||
Sbjct 834673 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834732
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 834733 GAAGATCTGCAT 834744
Score = 123 bits (136), Expect = 2e-23
Identities = 148/200 (74%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || | || ||||||||||| || || ||
Sbjct 834781 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAA 834840
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| || | ||||| | |||||||||| |||||| ||||| |
Sbjct 834841 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834900
Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721
| | |||||| |||| || ||||||| |||||| || || || |||| || ||
Sbjct 834901 CTCGATCGTGTC---CGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTT 834957
Query 35722 CACAAATATCTGCATTCTGT 35741
||| || |||||||| ||||
Sbjct 834958 CACGAAGATCTGCATCCTGT 834977
>seq6
Length=4219845
Score = 120 bits (132), Expect = 3e-22
Identities = 155/213 (73%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| ||| | || |||||| || |||||||| |||| || ||| || |||| ||
Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||||||| || || |||| |||||||| |||| || | || ||||||||||
Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGT 35703
|||||| ||||| | | | | ||| || |||| || ||||| | || || ||
Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCGACCTCAAGAGTAATGGT 2101112
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||||||| | ||||| || || ||||||||
Sbjct 2101113 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
>seq68
Length=961948
Score = 118 bits (130), Expect = 1e-21
Identities = 186/261 (71%), Gaps = 4/261 (2%)
Strand=Plus/Minus
Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190
|||||||||| ||||| || || || || || || ||||| | |||| |
Sbjct 663584 TGTGGAACGCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCATGGCTTTCTGCGGA 663525
Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC-GCGCTCGTTCAT 44249
|||||||| ||||||||| |||||||| || || | || | | |||||||
Sbjct 663524 TGTATTGGGCGAAGAAGATACTGGAGTGGACGAAA-ACGCCCGAGGAAGCGCTCGAAACG 663466
Query 44250 GCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGA 44309
|||||||||||||||||| ||||||| |||| || ||||| || ||||||||||| ||
Sbjct 663465 GCCATCTATCTGAACGACCGGTACAGTCTGGATGGGCGCGATCCGAACGGGTACGTCGGC 663406
Query 44310 TGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACGG 44368
||||||||||| || || | ||||| ||||| ||| |||| | || | ||
Sbjct 663405 TGTATGTGGTCGATCGCAGGCATACACGATCAGGG-TTGGAAGGAGCGTGCGATTTTTGG 663347
Query 44369 CAAAGTGCGCTACATGAACTA 44389
||| | || |||||||||||
Sbjct 663346 CAAGATTCGGTACATGAACTA 663326
>seq57
Length=1190389
Score = 104 bits (114), Expect = 2e-17
Identities = 165/236 (70%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | | || ||||| ||| | ||| ||||| ||||||||||| || | |
Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || || || || | |||||||| || | ||||
Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||||| | | | | |||||| | || |||
Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC---ATTCTGTG 35742
|| | ||||| || || || || | |||||||| || |||||| ||||||||
Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATTCTGTG 631533
>seq1
Length=5975090
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || ||||| || || | || ||| || | || |||||||||||||| |||||
Sbjct 5042896 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAG 5042837
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| |||||||| || | || | | |||||||||| ||||| ||||| | |
Sbjct 5042836 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5042777
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| | || ||||| | ||||| || || || |||| ||| || ||
Sbjct 5042776 TCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACG 5042717
Query 35726 AATATCTGCAT 35736
|| || |||||
Sbjct 5042716 AAGATTTGCAT 5042706
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || ||||| || || | || ||| || | || ||||||||||| || |||||
Sbjct 5043124 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 5043065
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| |||||||| || | || | | |||||||||| ||||| ||||| | |
Sbjct 5043064 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5043005
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| | || ||||| | ||||| || || || |||| ||| || ||
Sbjct 5043004 TCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACG 5042945
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 5042944 AAGATCTGCAT 5042934
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || ||||| || || | || ||| || | || ||||||||||| || |||||
Sbjct 5043352 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 5043293
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| |||||||| || | || | | |||||||||| ||||| ||||| | |
Sbjct 5043292 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5043233
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| | || ||||| | ||||| || || || |||| ||| || ||
Sbjct 5043232 TCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACG 5043173
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 5043172 AAGATCTGCAT 5043162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450661906284680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |