Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq20 125 6e-24 seq6 120 3e-22 seq68 118 1e-21 seq57 104 2e-17 seq1 93.3 4e-14 >seq20 Length=2346360 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || |||| ||||||||||| || || || Sbjct 834325 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAA 834384 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| || | ||||| | |||||||||| |||||| ||||| | Sbjct 834385 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834444 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||||| |||||| || || || |||| || ||||| Sbjct 834445 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834504 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 834505 GAAGATCTGCAT 834516 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || |||| ||||||||||| || || || Sbjct 834553 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAA 834612 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| || | ||||| | |||||||||| |||||| ||||| | Sbjct 834613 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834672 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||||| |||||| || || || |||| || ||||| Sbjct 834673 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 834732 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 834733 GAAGATCTGCAT 834744 Score = 123 bits (136), Expect = 2e-23 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || ||||||||||| || || || Sbjct 834781 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAA 834840 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| || | ||||| | |||||||||| |||||| ||||| | Sbjct 834841 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 834900 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| || ||||||| |||||| || || || |||| || || Sbjct 834901 CTCGATCGTGTC---CGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTT 834957 Query 35722 CACAAATATCTGCATTCTGT 35741 ||| || |||||||| |||| Sbjct 834958 CACGAAGATCTGCATCCTGT 834977 >seq6 Length=4219845 Score = 120 bits (132), Expect = 3e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || ||| || |||| || Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| || || |||| |||||||| |||| || | || |||||||||| Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGT 35703 |||||| ||||| | | | | ||| || |||| || ||||| | || || || Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCGACCTCAAGAGTAATGGT 2101112 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| | ||||| || || |||||||| Sbjct 2101113 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq68 Length=961948 Score = 118 bits (130), Expect = 1e-21 Identities = 186/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||||| ||||| || || || || || || ||||| | |||| | Sbjct 663584 TGTGGAACGCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCATGGCTTTCTGCGGA 663525 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC-GCGCTCGTTCAT 44249 |||||||| ||||||||| |||||||| || || | || | | ||||||| Sbjct 663524 TGTATTGGGCGAAGAAGATACTGGAGTGGACGAAA-ACGCCCGAGGAAGCGCTCGAAACG 663466 Query 44250 GCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGA 44309 |||||||||||||||||| ||||||| |||| || ||||| || ||||||||||| || Sbjct 663465 GCCATCTATCTGAACGACCGGTACAGTCTGGATGGGCGCGATCCGAACGGGTACGTCGGC 663406 Query 44310 TGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACGG 44368 ||||||||||| || || | ||||| ||||| ||| |||| | || | || Sbjct 663405 TGTATGTGGTCGATCGCAGGCATACACGATCAGGG-TTGGAAGGAGCGTGCGATTTTTGG 663347 Query 44369 CAAAGTGCGCTACATGAACTA 44389 ||| | || ||||||||||| Sbjct 663346 CAAGATTCGGTACATGAACTA 663326 >seq57 Length=1190389 Score = 104 bits (114), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | ||| ||||| ||||||||||| || | | Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || || | |||||||| || | |||| Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||||| | | | | |||||| | || ||| Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC---ATTCTGTG 35742 || | ||||| || || || || | |||||||| || |||||| |||||||| Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATTCTGTG 631533 >seq1 Length=5975090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || || | || ||| || | || |||||||||||||| ||||| Sbjct 5042896 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAG 5042837 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||||||| ||||| ||||| | | Sbjct 5042836 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5042777 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||| || || || |||| ||| || || Sbjct 5042776 TCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACG 5042717 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 5042716 AAGATTTGCAT 5042706 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || || | || ||| || | || ||||||||||| || ||||| Sbjct 5043124 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 5043065 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||||||| ||||| ||||| | | Sbjct 5043064 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5043005 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||| || || || |||| ||| || || Sbjct 5043004 TCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACG 5042945 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5042944 AAGATCTGCAT 5042934 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || || | || ||| || | || ||||||||||| || ||||| Sbjct 5043352 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 5043293 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||||||| ||||| ||||| | | Sbjct 5043292 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 5043233 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||| || || || |||| ||| || || Sbjct 5043232 TCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACG 5043173 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5043172 AAGATCTGCAT 5043162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450661906284680