Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq59 268 9e-67 seq57 122 9e-23 seq1 116 4e-21 seq6 113 5e-20 seq20 95.1 1e-14 seq24 91.5 1e-13 >seq59 Length=1145648 Score = 268 bits (296), Expect = 9e-67 Identities = 963/1493 (65%), Gaps = 36/1493 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 ||| ||| |||| ||||| || | | ||| ||| |||||||||||| ||||||| Sbjct 142535 CTATTTGCTGAAGATCAAGGGTAAGATTGTGGAGCGACCGCAACACATGCTGATGCGCGT 142476 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 || | || |||||||| ||||||||||| || ||| | || |||||| | || | || Sbjct 142475 TGCCATCGGTATTCACGGTGAAGACATTGATGCTGCCATCGAGACGTACAATCTGCTTTC 142416 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG-CCTC 7702 | | ||||| || || || || ||||||||||| || | || | ||| || | Sbjct 142415 CGAGCGCTACTTTACCCATGCCTCACCGACCATGTTTGCGGCCGCTACGCA-GCGTCCGC 142357 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACA 7762 | | || || || ||| |||| |||||| || ||||| || || || |||||| | | Sbjct 142356 AGCTTTCGTCTTGCTTTCTGCTTACCATGTCGGACGACAGTATTGAGGGTATTTACGATA 142297 Query 7763 CGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 |||| | || || |||||||||| | |||||| || || |||||||| || Sbjct 142296 CGCTAAAGCAGTGTGCACTGATTTCCAAATCGGCCGGCGGTATCGGGCTGAACGTGCACT 142237 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | | |||||||| || | |||| ||| || || | | | ||| || | || Sbjct 142236 GCATTCGCGCCAAAGGAACGTACATCTCCGGCACGAATGGGATTTCGAACGGGTTGGTGC 142177 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCA 7939 | ||| ||||||| | ||| ||| ||| || | || || ||||| || ||||| Sbjct 142176 CGATGCTGCGCGTTTACAACAACACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGGC 142117 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATC 7999 |||||| ||||||||| | || || ||||||| ||| || | || | || ||| Sbjct 142116 CCGGCGCCTTTGCCATCTACCTCGAACCATGGCACGGGGATATATTCGAGTTTCTGGATC 142057 Query 8000 TGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 || |||| || || || || ||||| | |||| || ||||| Sbjct 142056 TGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGGA 141997 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || |||||||| ||| ||| || | ||| | ||| || |||||||| Sbjct 141996 TCCCGGATCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCAC 141937 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| ||| || || || | | || || | |||||| | Sbjct 141936 ACGACTGCCCCGGATTGGCTGACACTTGGGGCGAAGAGTTCGAGAAGCTGTACACTGGGT 141877 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 |||| || || || | | || || ||||| || | ||||| ||||| | Sbjct 141876 ACGAGCAGGAGGGTCGATTTATACGCCAGGTGAAGGCACAGGACCTATGGTTTGCCATCA 141817 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 |||||| || ||||| || | ||||||||||||||||| || || |||||| || Sbjct 141816 TCGAATCGCAGGTGGAAACGGGCGTTCCGTACATGCTGTACAAGGATGCGTGCAACCGCA 141757 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | |||||||| ||| | |||||||| || ||||||||| | || || || Sbjct 141756 AGAGCAATCAGCAGAACATCGGCACCATAAAGTGTTCCAATCTGTGTACCGAGATAGTGG 141697 Query 8360 AGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGT 8419 ||||| || || ||| | || || |||||| | || ||| | | ||| || Sbjct 141696 AGTACTCGTCGAAGGATGAAATAGCGGTGTGCAATTTGGCCTCGATCGCGCTGAACATGT 141637 Query 8420 TCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAG--- 8476 | || | | || |||| || |||||||||| | |||| | | || | ||| Sbjct 141636 TTGTGAAAC--CGGACAAA-ACGTACGACTTTGCCAAGCTGAAGGATGTCGCG-AAGATT 141581 Query 8477 -TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTT---GGA--AG 8530 ||||| |||||| | | || || ||| | || | ||||| | ||| | Sbjct 141580 TTGACG---CGCAATCTGAACAAAATTATCGATATAAACTACTATCCAGTACCGGAGGCG 141524 Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 |||||| || |||||||| ||||| || | || | || || || || |||||| Sbjct 141523 AAGCGC-----TCCAACATGCGGCACAGGCCGATCGGTATCGGTGTTCAGGGCATGGCCG 141469 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 | ||||| || ||||| || ||||||||| | || || | | ||| ||| | Sbjct 141468 ATGCGTTCATTTTGATGCGCTATCCGTACGAAAGCGAGGAGGCCCAAAAGCTGAACCAAC 141409 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACT---TGCCCGAG 8707 |||| ||||| | || ||||| ||||| ||||| |||||| | | ||||| | Sbjct 141408 AAATTTTCGAAACAATCTACTACGGAGCATTGGAAGCGAGCTGTGAGTTGGCCGCCCGCG 141349 Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | || |||||||| |||||| || || || | ||| || || |||| |||| Sbjct 141348 A---CGGACCGTACGAAACGTACGAAGGGAGTCCGGTAAGCAAAGGCATCCTGCAGTACG 141292 Query 8768 ACATGTGGA--ATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAAT 8825 | ||||||| | | || | |||| ||||||||| ||| ||||| ||||| Sbjct 141291 AAATGTGGAAGAAGGAACCGTCGGATCTT--TGGAATTGGGCCGAGTTGAAGGAAAAAAT 141234 Query 8826 TGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGC 8885 ||| | ||| | |||||||||||| || |||| ||||| ||||| |||| || Sbjct 141233 TGCAAAGCACGGCATCCGCAATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGC 141174 Query 8886 TCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACG 8945 ||||| |||| |||||||| ||||| || |||| ||| |||||| ||| | || Sbjct 141173 ACAAATCTTGGGTAACAACGAGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCG 141114 Query 8946 AGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGA 8998 || | ||||||| ||| || |||| | ||| || ||| || |||| Sbjct 141113 TGTACTTTCCGGCGAGTTTCAGGTGGTGAACCACCATCTGCTGCAAGATTTGA 141061 >seq57 Length=1190389 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||||| ||| || || || || |||||||| |||||||||||||| Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || || | |||||||||||| || || Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| || | || || Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | ||||| |||||||| ||||| Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524 >seq1 Length=5975090 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || ||||| ||||| | |||| | || || Sbjct 5043142 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043083 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||||||| ||||| || || || || || ||| Sbjct 5043082 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043023 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | |||||||| | || || ||||| || ||||| || Sbjct 5043022 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5042963 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || ||||| || ||||| Sbjct 5042962 CCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || ||||| ||||| | |||| | || || Sbjct 5043370 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043311 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||||||| ||||| || || || || || ||| Sbjct 5043310 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043251 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | |||||||| | || || ||||| || ||||| || Sbjct 5043250 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5043191 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || ||||| || ||||| Sbjct 5043190 CCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || ||||| ||||| | |||| | || || Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| |||||||||||| ||||| || || || || || ||| Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5042795 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | |||||||| | || || || || || || || || Sbjct 5042794 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTT 5042735 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | ||| || ||||| |||||||| ||| Sbjct 5042734 CCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 5042702 >seq6 Length=4219845 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || ||||| || |||||||||||| | |||| | Sbjct 2100928 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 2100987 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || |||| |||||||||||| ||||| ||||| || Sbjct 2100988 CCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCC 2101047 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | || || || | || || || |||||| Sbjct 2101048 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTA 2101107 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 2101108 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 2101149 >seq20 Length=2346360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | ||||| | || | ||| || || || ||||| || |||||||||||| Sbjct 834287 TTTCCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCG 834346 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || || ||| || ||||| || || || || ||||||||||||||||| || Sbjct 834347 GACAGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGA 834406 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || || || || || || || | ||||| |||| || Sbjct 834407 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCG 834466 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || ||||| || ||||| Sbjct 834467 ACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || || ||||| || |||||||||||| Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| || || || || ||||||||||||||||| || || Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || || | ||||| |||| || || Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 >seq24 Length=2206587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 21528 CAATTCCACGCA-CAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAAT 21586 ||| |||| ||| ||||||||||||||| || |||||||| || |||| || |||| Sbjct 1947387 CAACTCCA-GCAGCAAACGATCCGCCACAAACTCAATGTACTGCGACATCAGATCACAAT 1947445 Query 21587 TCATGCCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCG 21646 ||||||| | || ||||||||| || |||| || ||||| || | |||||| | |||| Sbjct 1947446 TCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACTACCG 1947505 Query 21647 CTTC 21650 | || Sbjct 1947506 CATC 1947509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505250754174920