Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq59 370 1e-97 >seq59 Length=1145648 Score = 370 bits (410), Expect = 1e-97 Identities = 1203/1847 (65%), Gaps = 42/1847 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| || ||||||||||| || |||||||| || | |||| ||||| || Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| || ||| ||| | || ||||| | || || || | |||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA---GGAATT 68571 |||||||| || || || | || || ||||| || ||| | | ||| | | ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTT---AATGCACGTTTTAACCGAAATC 140942 Query 68572 TCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAA 68626 ||||| | || || | | ||| | || || | || | | ||| | |||||| Sbjct 140943 TCCCACACCGTTTTGTACAGATCGCGT--ATTTCCTTCGGTATCGATTCGATGCTTTGAA 141000 Query 68627 TGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCG 68686 | ||||| | ||| | |||| ||||| || || || ||||| || | | Sbjct 141001 TCGATCCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTG 141060 Query 68687 TTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAG 68746 | ||| || || ||||| | || || | ||||| || || || | || | ||| Sbjct 141061 TCAAATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGAT 141120 Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 |||||| || || || ||||| | || || || || |||| ||||| || || | Sbjct 141121 TGTAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCG 141180 Query 68807 ATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTAT 68866 | || || ||||| ||||||| || | ||| | | || || || ||||| | Sbjct 141181 AAGCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTT 141240 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 | || | | ||||| ||||||||| || ||| | ||||| | ||||| || | Sbjct 141241 CCTTCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCA 141300 Query 68927 GAATTCCGTTACTTGCATATGA-TCCATTA-TATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 | || || || ||| | || ||| || || ||||| || ||||| || | | || Sbjct 141301 GGATGCCTTTGCTTACCG--GACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGC 141358 Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 | ||||| || || || ||||| ||||| || |||||||||||||| | | || || Sbjct 141359 CAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAG 141418 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 | ||| || || || ||| | ||||| | | | ||| || ||||| |||| || Sbjct 141419 CTTTTGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCC 141478 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 |||||| || |||||||| || || || | | | || || | | || || || | || Sbjct 141479 CTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGG 141538 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224 ||| || || ||||| |||||||| || ||||| || | | || | || ||||| Sbjct 141539 ATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTT 141598 Query 69225 TAGTTTGAGAAAATCAAA----TCGTCCATCTATAACAAACATATTCAGTGCTACAGATG 69280 || ||| ||| || | | |||| | | |||||||| ||||| || | || | Sbjct 141599 CAGCTTGGCAAAGTCGTACGTTTTGTCC-GGTTTCACAAACATGTTCAGCGCGATCGAGG 141657 Query 69281 CTAGATTACAAACTGCTA---CCTCATTAGAATTTGCATATTGTATTATCTCTGTACATA 69337 | | ||| || || |||| | || || || | || | | |||||| ||||| | Sbjct 141658 CCAAATTGCACACCGCTATTTCATCCTTCGA---CGAGTACTCCACTATCTCGGTACACA 141714 Query 69338 GATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCT 69397 |||| ||| || || || || | || |||||||| ||||| ||| || || |||| Sbjct 141715 GATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCT 141774 Query 69398 TGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGA 69457 |||| || || ||||| || ||||| | ||| |||||||| || | ||| | | Sbjct 141775 TGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGT 141834 Query 69458 CCCTAGCATTTATTACGGTCTTGTAA--CGCTTCTCTTTTTCATATTGTGTATATAGCCG 69515 || || || | | | | | ||| || ||| | || || || || ||| Sbjct 141835 CCTGTGCCTTCA--CCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTT 141892 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||||| || || |||||| ||| ||||||| || || || | ||| ||||||| Sbjct 141893 CTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCT 141952 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||||| || | ||| || || | ||| || ||||| || ||||| || || || Sbjct 141953 CCACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAA 142012 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | || | || | || || || || || ||||| || ||||| |||||||| | Sbjct 142013 CATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAA 142072 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||||| ||||||||||| || || || || | | | || || || || || || || Sbjct 142073 TATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACC 142132 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | ||| | ||| ||||| || || || | ||||||||| | | || || || Sbjct 142133 CTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGA 142192 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGAC 69874 | ||||| || || || || || ||||| | |||||||| | | | | || | Sbjct 142193 AATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAAT-GCAGTGCACGTTCAGCC 142251 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || || ||| ||| || || || ||||| | || | || || || ||||||| Sbjct 142252 CGATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCT 142311 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT---GATGATGTATAG 69991 | || || || || |||| |||| ||||| || || | | || | || ||| Sbjct 142312 CAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAG 142371 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 |||| ||| | || || || || || || || | || ||||||||||||| Sbjct 142372 CGGCCGC---AAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGT 142428 Query 70052 ATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 | || || || || | || || || ||| | ||||| || || || || ||||||| | Sbjct 142429 ACGTCTCGATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGC 142487 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || ||||| || || | ||| || || |||| || || || ||||| Sbjct 142488 ATGTGTTGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGT 142547 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || || ||||||||||| || || | |||||||| || Sbjct 142548 GTTTTGAAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGAT 142594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686708128180440