Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 4e-20
seq57 104 2e-17
seq1 102 7e-17
>seq6
Length=4219845
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||||| || | |||| ||| | || || || || || || |||||||||
Sbjct 2100918 GCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2100977
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| | |||| |||| || ||||| ||||||||| | || |||||||| |||||||||||
Sbjct 2100978 CAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 2101037
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAA 27198
| ||||| || || |||||| |||| | || | || || | |||| || |
Sbjct 2101038 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGC-TCGA 2101096
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || ||||| || | || ||||| || ||||| || ||||| |||||
Sbjct 2101097 CCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
>seq57
Length=1190389
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||| ||| | ||||| || || ||||| |||||||| |
Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | || || ||||| || |||||| | ||||||||||| ||||| || ||
Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || ||||| ||||||| |||| | || | ||||| | | || ||
Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | ||||| || || |||||||| || || |||||
Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524
>seq1
Length=5975090
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || |||| || | |||| ||| | || || || || || || || |||||
Sbjct 5042934 TGCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCG 5042875
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| | ||||| ||||| ||||| || | || |||||||| ||||| ||||
Sbjct 5042874 ACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCG 5042815
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197
| | ||||| || || |||||| |||| | || | ||||| | ||||| ||
Sbjct 5042814 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCT-CA 5042756
Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || |||| || || |||||||| || || |||||||||||
Sbjct 5042755 ACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424813364208552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |