Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq24 129 2e-24 seq59 116 1e-20 >seq24 Length=2206587 Score = 129 bits (142), Expect = 2e-24 Identities = 129/166 (78%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| | ||||| ||||||| ||||| || | || || ||||||||||| Sbjct 1947732 CTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCAGCTT 1947673 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || |||||||||||| | || |||||||| ||||||| ||||| ||||| |||| Sbjct 1947672 T-GCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATGCCGGGTCTTACCTTCTCGAACG 1947614 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | ||||| |||||||||| |||||||| || |||||||| || Sbjct 1947613 AGCTGATTTCGAGGGACGAGGGATTGCATTGTGATTTCGCCTGCCT 1947568 >seq59 Length=1145648 Score = 116 bits (128), Expect = 1e-20 Identities = 230/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | ||||||| ||| || ||||| ||||| || ||| ||| || Sbjct 142177 CCGATGCTGCGCGTTTACAACAACACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGG 142118 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || || || |||||||||| || || ||||||| || || |||| | Sbjct 142117 CCCGGCGCCTTTGCCATCTACCTCGAACCATGGCACGGGGATATATTCGAGTTTCTGGAT 142058 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 ||| | || ||||||| |||||| || ||||||||||| | | ||| | ||| Sbjct 142057 CTGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGG 141998 Query 255161 TGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATGTGTCC 255219 | |||||||| |||| || ||||| ||| |||| | |||||||| ||||| || Sbjct 141997 ATCCCGGATCTGTTCATGCAGCGTGTGGAGGCGA-ACGAAATGTGGAGCCTGATGTGCCC 141939 Query 255220 CAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTA-TCTGG 255278 || | ||||| | | ||| ||||||| || ||||| || || ||||| |||| Sbjct 141938 ACACGACTGCCCCGGATTGGCTGACACTTGGGGCGAAGAGTTCGAGAAGCTGTACACTGG 141879 Query 255279 AGTACGAGCGTGCCGGCCGGTTCGTACGCCAAGTG 255313 |||||||| | || || || ||||||| ||| Sbjct 141878 -GTACGAGCAGGAGGGTCGATTTATACGCCAGGTG 141845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587860387179095