Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq59 129 7e-25 seq72 100 4e-16 >seq59 Length=1145648 Score = 129 bits (142), Expect = 7e-25 Identities = 457/705 (65%), Gaps = 17/705 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| ||||| ||| | || || ||||||||||||||||| || || Sbjct 141122 GTAAACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGA 141181 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGT 110824 || || ||||| ||||||| || || || || | || | || ||| || | Sbjct 141182 AGCGGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCT--TTGCAATTTTT 141239 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| | | |||| | | || | | |||| | ||||| |||| || ||| Sbjct 141240 TCCTTCAACTCGGCCCAATTCCAAAGATCCGAC-GGTTCCTTCTTCC-ACATTTCGTACT 141297 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | |||| | | ||| || || | ||||| || | || | | | | Sbjct 141298 GCAGGATGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGG 141357 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||| ||||||||||| |||| | | ||| || || ||||| || || | |||| Sbjct 141358 CCAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCA 141417 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || | ||| || || || | | ||||| |||||| || |||| || | | Sbjct 141418 GCTTTTGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGC 141477 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119 | |||||||| | ||| || || ||||| ||||| || || ||| | ||| | Sbjct 141478 CCTGAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAG---CGCTTCGCCTCCGGTA 141534 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | ||||| | ||| | || || | | ||| ||||| || | |||||| | || | Sbjct 141535 CTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACAT 141594 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | || || || | || | || ||| | || ||| || | || |||| Sbjct 141595 CCTTCAGCTTGGCAAAGTCGTACGTTTT-GTCCGGT--TTCACAAACATGTTCAGCGCGA 141651 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || ||||||||||| || || | |||||||| | |||||| | || || |||| Sbjct 141652 TCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTACTCCACTATCTCGGTAC 141711 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||||||| ||| || || || | |||| || || ||||| ||||||||||| Sbjct 141712 ACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCAT 141771 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 ||||||| |||||||| || ||||| ||| ||| |||| || Sbjct 141772 CCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGA 141816 >seq72 Length=881775 Score = 100 bits (110), Expect = 4e-16 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| ||||| || |||| || ||| || ||||| || | || || || Sbjct 354536 CCGCTTCTACCAAGCGTCCACCTCGGAACTGTACGGCAAGGTGGCTGAAACGCCGCAGAA 354477 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 9273 ||| ||||||| |||||||||||||| |||| ||||| | | ||| | | Sbjct 354476 CGAAAAGACACCGTTCTACCCACGCTCACCGTACGCCTGTGCAAAGATGTACGG-TTACT 354418 Query 9274 GGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCA 9333 || | || | ||| || ||||| | ||| |||| || ||| ||| ||||| |||| Sbjct 354417 GGATTGTGATAAACTATCGCGAAGCGTACAACATGTTCGCCTGCAACGGGATCCTTTTCA 354358 Query 9334 ACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC--GAGGGTAT 9391 |||| ||||||||| | ||||| | | |||| || || ||||| ||| ||| Sbjct 354357 ACCACGAATCACCGCGCCGAGGAGAAAACTTCGTTACACGCAAGATCACCCGTTCGGTTG 354298 Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451 | || | || | || | | |||| | | || ||||||| | || || || | Sbjct 354297 CGAAGATTTC--GCTCGGACAGCAAGAGTACCTGGAGCTGGGTAATCTGGACTCGAAGCG 354240 Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGA 9508 || ||||| ||||| || ||||| || ||||| |||||||| ||| | || || || Sbjct 354239 TGACTGGGGCCACGCCAAAGACTACGTGGAAGCGATGTGGCTGATGATGCAGCAGGA 354183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627848528301600