Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq59 107 2e-18 seq7 87.8 2e-12 >seq59 Length=1145648 Score = 107 bits (118), Expect = 2e-18 Identities = 446/689 (65%), Gaps = 25/689 (4%) Strand=Plus/Plus Query 118188 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 118247 |||| |||||| || || ||| |||| ||||||||||||||||| || || || || || Sbjct 141129 TTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTA 141188 Query 118248 GGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGA 118305 ||||| ||||||| || || || |||| || | ||| | ||| |||||| | Sbjct 141189 GGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGC--AATTTTTTCCTTCA 141246 Query 118306 GAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGAT 118363 || |||| | | || | | || ||| || |||||| || |||| ||||| Sbjct 141247 ACTCGGCCCAATTCCAAAGATCCGACG-GT-TCCTTCTTCCACATTTCGTACTGCAGGAT 141304 Query 118364 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 118423 |||| | | || || || | || || || || || || | ||||| || Sbjct 141305 GCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 118424 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483 ||||||| || | ||| ||| || |||||||| ||||| | |||| || || Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCA--GCTTT 141422 Query 118484 --GGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTG 118540 |||||| ||| || ||| || ||| |||||| || |||| || | || || Sbjct 141423 TGGGCCTCCTCGCTTTCGTACG-GATAGCGCATCAAAATGAACGCATCGGCCATGCCCTG 141481 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTC-CGAGCGGTCTCCACGG 118596 ||||||| || || || | || | ||| || || |||| | |||| || | Sbjct 141482 AACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGT----ACTG 141537 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 |||| | || ||||||||| | || ||||| || | || ||| | || || | Sbjct 141538 GATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCT 141597 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 ||||| | | || | | ||| | || ||| || | || ||||| | Sbjct 141598 TCAGCTTGGCAAAGTCGTACGTTTT-GTCCGGT--TTCACAAACATGTTCAGCGCGATCG 141654 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||| ||| ||||| | | |||||||| | |||||| | || || || |||| Sbjct 141655 AGGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTACTCCACTATCTCGGTACACA 141714 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 || |||| ||| |||||||| | ||||| ||||| ||| ||| |||||||||| Sbjct 141715 GATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCT 141774 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 |||| |||||||| || ||||| ||| Sbjct 141775 TGTACAGCATGTACGGAACGCCCGTTTCC 141803 >seq7 Length=4015228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 179955 CTTCCCACGGAGAGGGAACACACCGTA-GTGATCACGACCAACCACAGAGAGACCAGCAA 180013 ||| ||||| | || ||||| ||||| ||| || || || ||||| | || | || Sbjct 169998 CTTACCACGCAACGGAAACACTCCGTACGTG-TCGCGTCCGACCACTCCCAACCCGGAAA 170056 Query 180014 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTGT 180072 | || || || || || ||||| |||||||| | |||||||||||| || | |||| Sbjct 170057 CGGCCAGCGTTTTGGCCGAATCTCCCTCCGTAAGGATGAGCGTACAGTTGAGCGAATTGC 170116 Query 180073 GCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 180128 | ||| || || | ||| ||||| |||| ||| ||||| || |||| |||||||| Sbjct 170117 G-CGTACCAGCGTCGTTGGCGTCTTCCAGCTTCGGAATGCCCTTAATCTTGGACTT 170171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618254531886760