Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq72 107 2e-18 seq24 95.1 1e-14 seq7 89.7 6e-13 >seq72 Length=881775 Score = 107 bits (118), Expect = 2e-18 Identities = 240/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | |||||||| || || ||||| ||| || || || ||||| || || ||| Sbjct 354535 CGCTTCTACCAAGCGTCCACCTCGGAACTGTACGGCAAGGTGGCTGAAACGCCGCAGAAC 354476 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7350 || ||||||| |||||||||||||| |||| ||||| | | ||| | || Sbjct 354475 GAAAAGACACCGTTCTACCCACGCTCACCGTACGCCTGTGCAAAGATGTACGG-TTACTG 354417 Query 7351 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7410 | | || | ||| || ||||| | ||| |||| || ||| ||| ||||| ||||| Sbjct 354416 GATTGTGATAAACTATCGCGAAGCGTACAACATGTTCGCCTGCAACGGGATCCTTTTCAA 354357 Query 7411 CCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC--GAGGGTATC 7468 ||| ||||||||| | ||||| | | |||| || ||| ||||| ||| ||| | Sbjct 354356 CCACGAATCACCGCGCCGAGGAGAAAACTTCGTTACACGCAAGATCACCCGTTCGGTTGC 354297 Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528 || | || | || | | |||| | | || ||||||| | || || | | Sbjct 354296 GAAGATTTC--GCTCGGACAGCAAGAGTACCTGGAGCTGGGTAATCTGGACTCGAAGCGT 354239 Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGA 7584 || ||||| ||||| || ||||| || ||||| |||||||| ||| | || || || Sbjct 354238 GACTGGGGCCACGCCAAAGACTACGTGGAAGCGATGTGGCTGATGATGCAGCAGGA 354183 >seq24 Length=2206587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | |||||| |||| | ||||| | | ||||| || || ||||| | || Sbjct 1947815 CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAAC 1947756 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | | ||| | | ||||| ||||| | |||||||||| || ||| Sbjct 1947755 TGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAG 1947696 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 |||||||||||| || ||| |||| | || | |||||||||||||| || || || Sbjct 1947695 GGTATCTTCTTCAGCGGCAGCTT-TGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTAT 1947637 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||| ||||| |||||| |||||||| || || | ||||||||| Sbjct 1947636 GCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGA 1947591 >seq7 Length=4015228 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 168431 GTAAAGATATACCTCGTT-TGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTG 168489 || ||||| ||||||| || || |||||| || || | || |||||||||||||| Sbjct 169039 GTGAAGATGTACCTCGGGCTGGCACT-ATCCTTTCCGCCGGTCAGGCGCGTACCAAACTG 169097 Query 168490 ACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGAC 168549 || | ||| | || || ||||| ||||| || | ||| | | ||||| |||| Sbjct 169098 GCCGCCCGGATACAGCAGGTTGATGTTGTTGCTGCCGACGTAATTCTGCGCCAGGTTGAT 169157 Query 168550 AATCGTGTCCGCGAGAGAGACT--TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAAT 168607 || ||| || |||| |||| ||||||||||||||||| ||| ||||| || || Sbjct 169158 GATGGTG-GAGC-AGAGCGACTGCTCACCGTGGTGGTACGCCGACTTTTCTGCCACCGAT 169215 Query 168608 GCCGCCAACTGCGCCACTTTCATCTC 168633 | |||| ||| ||||| |||| ||| Sbjct 169216 CCAGCCAGCTGGGCCACCTTCACCTC 169241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583090407648040