Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq57 178 4e-39
seq1 159 1e-33
seq156 96.9 1e-14
seq74 93.3 1e-13
seq63 93.3 1e-13
seq37 93.3 1e-13
seq16339 91.5 4e-13
seq2518 91.5 4e-13
seq25 91.5 4e-13
seq20 91.5 4e-13
seq11 91.5 4e-13
seq20043 87.8 5e-12
seq6 87.8 5e-12
>seq57
Length=1190389
Score = 178 bits (196), Expect = 4e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||| || | || || || |||||||| ||||| || || ||||| || || || ||
Sbjct 631297 ACCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 631356
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || || || ||||| ||||| |||||||| |||||
Sbjct 631357 CAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 631416
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||||||| |||||||| || || || || ||||| || |||| || || || || ||
Sbjct 631417 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 631476
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| | ||||| ||||| |||||||| || |||||||||||
Sbjct 631477 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524
>seq1
Length=5975090
Score = 159 bits (176), Expect = 1e-33
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
|| ||||||||||| | | || || ||||| || || || || || || || |||||
Sbjct 5043394 TAAATACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAG 5043335
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | || || |||||||| || || || ||||||||||| ||||| ||||||||
Sbjct 5043334 TCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCT 5043275
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || ||||| || || |||||||| || || || ||||| || || | || |||||
Sbjct 5043274 GGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGC 5043215
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||||||||| || || || || || ||||||||
Sbjct 5043214 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | || || ||||| || || || || || || || ||||| ||
Sbjct 5042936 CATGCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTC 5042877
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || |||||||| || || || ||||||||||| ||||| |||||||| ||
Sbjct 5042876 CGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGG 5042817
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| ||||| || || |||||||| || || || ||||| || || | || ||||| ||
Sbjct 5042816 CGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTC 5042757
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| || | ||||||||||| || || || || || || |||||
Sbjct 5042756 AACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | || || ||||| || || || || || || || ||||| ||
Sbjct 5043164 CATGCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTC 5043105
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || |||||||| || || || || |||||||| ||||| |||||||| ||
Sbjct 5043104 CGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 5043045
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| ||||| || || |||||||| || || || ||||| || || | || ||||| ||
Sbjct 5043044 CGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTC 5042985
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | ||||||||||| || || || || || ||||||||
Sbjct 5042984 AACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934
>seq156
Length=138726
Score = 96.9 bits (106), Expect = 1e-14
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 235884 ATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGA 235943
||| | |||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 123289 ATACACGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGA 123230
Query 235944 TCAAAACCCAGCATCTCCATACA 235966
|| | |||| ||||||||| |||
Sbjct 123229 TCGATACCCGGCATCTCCAGACA 123207
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 110501 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 110442
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 110441 CCCGGCATCTCCA 110429
>seq74
Length=863053
Score = 93.3 bits (102), Expect = 1e-13
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 724624 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 724565
Query 235950 CCCAGCATCTCCATACAAT 235968
||| ||||||||| ||||
Sbjct 724564 CCCGGCATCTCCAAGCAAT 724546
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 722315 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 722374
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 722375 CCCGGCATCTCCA 722387
>seq63
Length=1014770
Score = 93.3 bits (102), Expect = 1e-13
Identities = 73/86 (85%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 668164 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 668223
Query 235950 CCCAGCATCTCCATACAATGACACCG 235975
||| ||||||||| || | ||||||
Sbjct 668224 CCCGGCATCTCCA-ACCTTTACACCG 668248
>seq37
Length=1690795
Score = 93.3 bits (102), Expect = 1e-13
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | |
Sbjct 445134 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACTGGGATCGATA 445193
Query 235950 CCCAGCATCTCCATAC 235965
||||||||||||| ||
Sbjct 445194 CCCAGCATCTCCAAAC 445209
>seq16339
Length=641
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 484 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 543
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 544 CCCGGCATCTCCA 556
>seq2518
Length=2007
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 179 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 238
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 239 CCCGGCATCTCCA 251
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 1829 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 1770
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 1769 CCCGGCATCTCCA 1757
>seq25
Length=2202290
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 1345457 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 1345516
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 1345517 CCCGGCATCTCCA 1345529
>seq20
Length=2346360
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 543758 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 543817
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 543818 CCCGGCATCTCCA 543830
>seq11
Length=3233111
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 1753687 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 1753746
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 1753747 CCCGGCATCTCCA 1753759
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 1812801 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 1812860
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 1812861 CCCGGCATCTCCA 1812873
>seq20043
Length=558
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 415 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 356
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 355 CCCGGCATCTCCA 343
>seq6
Length=4219845
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 3084676 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3084735
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 3084736 CCCGGCATCTCCA 3084748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514800670801913
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |