Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq59 286 4e-72 seq24 93.3 5e-14 >seq59 Length=1145648 Score = 286 bits (316), Expect = 4e-72 Identities = 1126/1736 (65%), Gaps = 64/1736 (4%) Strand=Plus/Plus Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248 |||||||| ||||||||||||||| || || ||| | ||||| ||||| | ||| || Sbjct 140774 TGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAGTGGATCGA 140833 Query 78249 CGACAGCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | ||||||| ||| | | ||||| ||| | ||||||| ||| || ||||| |||| Sbjct 140834 TGTCAGCTTG-CCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGA 140892 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 | ||||||| ||||| || ||||| | ||| || || || ||||||||| | | Sbjct 140893 TAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCCCACACCG 140952 Query 78368 TCCGGTAAA--TGGCCTTCAGCTCTTCC---TGGATGTCCAGCGCTTGTA-CGCTCCCAC 78421 | ||| | | || | | |||| | ||| || | ||| | || ||| Sbjct 140953 TTTTGTACAGATCGCGTATTTC-CTTCGGTATCGAT-TCGATGCTTTGAATCGATCCGTT 141010 Query 78422 CGGCTCG-CACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGA-AGATC 78479 | | | || ||||| ||||| || | | | ||| || ||| ||| | ||| Sbjct 141011 --GTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCG-CTGTCAAATC 141067 Query 78480 CCGGACCAGGTGCCGGTTAATCA--TGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 | | ||| || |||| | || ||| |||||||||| || || || ||| Sbjct 141068 TTGCAGCAGATGGTGGTTCACCACCTGA--AACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 | ||||| ||||||||| ||||| | ||||||||| |||| ||| || || ||||| ||| Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTT 78657 || ||||| ||||| | ||| || ||||| || | || ||| | || | |||| Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245 Query 78658 AGGCCGTCCCAAAATTC-----ATTCGCCG---CGATCCCCCACATGTCCGGTTGAAGGA 78709 | || ||||| ||| || || || | || |||||| || || |||| Sbjct 141246 AACTCGGCCCAA--TTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGA 141303 Query 78710 TACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTT 78769 | || | | |||| ||| | | |||| ||||| | ||| || ||| | | Sbjct 141304 TGCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACT 141363 Query 78770 CGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC 78829 | || | | || || ||| ||| | | ||||| || | ||| |||| Sbjct 141364 CACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTT 141423 Query 78830 GCGCCTTGGTCTCG---TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCT 78886 | |||| |||| ||| ||| | || | || ||||| ||||||||| ||||| Sbjct 141424 GGGCCTC---CTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCT 141480 Query 78887 GGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTC-GGTC 78942 | || |||||| ||||||| | ||| ||||||||| | ||| |||||| ||| Sbjct 141481 GAACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTT------CGCCTCCGGTA 141534 Query 78943 --GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCT 79000 || || |||| |||||| | |||||| || ||||| | | | | || | Sbjct 141535 CTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACAT 141594 Query 79001 CGTACAATTTGGCGAAATCAAAATGATT-TCC--TTTGATGAAAGTCGGTAGGCAC-AGC 79056 | | || ||||| || || | || ||| ||| | || | | | || | | | Sbjct 141595 CCTTCAGCTTGGCAAAGTCGTACGTTTTGTCCGGTTTCACAAACAT-GTTCAGCGCGATC 141653 Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGC 79114 || |||| |||||||| || | || ||| | | || | ||| | || || || | Sbjct 141654 GAGGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTA--CTCCACTATCTCGGTAC 141711 Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 ||| ||| || |||| |||||||||||||||| ||| |||||||| ||| || || | Sbjct 141712 ACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCAT 141771 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234 ||||||| ||||||||| || || || ||||| | || | | | ||| | Sbjct 141772 CCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATA 141831 Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTAC--CGACCCTG-TGCGACGTACGTCCGGTACA 79291 |||| | ||| || | | | || ||||||| ||| ||||| ||||| Sbjct 141832 GGTCCTGTGCCTTCAC--CTGGCGTATAAATCGACCCTCCTGCT-CGTACCCAGTGTACA 141888 Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 || | ||| | || || | || | || || ||||| ||||| |||||||||| Sbjct 141889 GCTTCTCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCA 141948 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 || ||| |||| | ||| || || |||||| || ||||||||||||||||| Sbjct 141949 GGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGT 142008 Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471 ||| | ||||||| ||||| |||||| | ||| ||| ||| || ||||| | Sbjct 142009 AGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACT 142068 Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531 | | || || ||||||| || || || |||||||| || | || |||||| || Sbjct 142069 CGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGC 142128 Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 | ||||| | ||||||||||||||||||||| |||| || ||||| ||||| | |||| Sbjct 142129 CACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGT 142188 Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGG 79650 | | || ||||| ||| ||| || || | || |||||| | ||| || Sbjct 142189 TCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATG-CAGTGCACGTTC 142247 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | ||||| || |||| | | ||||| || | || |||| ||| ||||| ||||| || Sbjct 142248 AGCCCGATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATA 142307 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 ||||| || ||||||| ||| | | ||| ||||| ||| | ||| || | | Sbjct 142308 CCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGC 142367 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 ||| |||| || | |||||| | || || || ||| | | | | ||||| | Sbjct 142368 GTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTG 142427 Query 79831 TACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 |||||||| || | | ||| || ||||| || |||| || |||||||| Sbjct 142428 TACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCAT 142483 Score = 260 bits (288), Expect = 2e-64 Identities = 1067/1654 (65%), Gaps = 56/1654 (3%) Strand=Plus/Minus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 ||| || || || | |||||| | || |||| |||| | |||||| | ||| Sbjct 142406 CTTTACCCATGCCTCACCGACCATGTTTGCGGCCGCTACGCAGCGTCCGCAGCTTTCGTC 142347 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 || || || | | ||| ||| ||||| |||||||| || ||||| ||||| ||| | Sbjct 142346 TTGCTTTCTGCTTACCATGTCGGACGACAGTATTGAGGGTATTTACGATACGCTAAAGCA 142287 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGT 19373 ||| || | || ||||| | | |||| ||||||||| | || ||| | || || Sbjct 142286 GTGTGCACTGATTTCCAAATCGGCCGGCGGTATCGGGCTGAACGTGCACTGC-ATTCGCG 142228 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 | | || || ||| || ||||| || | | |||| | || || ||||| | Sbjct 142227 CCAAAGGAACGTACATCTCCGGCACGAATGGGATTTCGAACGGGTTGGTGCCGATGCTGC 142168 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGT 19493 |||| | ||||||||||||| ||||||| | ||||| ||| ||| || ||| | | Sbjct 142167 GCGTTTACAACAACACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGGCCCGGCGCCT 142108 Query 19494 TCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGA 19553 | |||||||||||||| |||||||||| ||| | | || || || || ||| | Sbjct 142107 TTGCCATCTACCTCGAACCATGGCACGGGGATATATTCGAGTTTCTGGATCTGAAGAAAA 142048 Query 19554 ACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACC 19613 || || | |||||| |||| |||||| | ||| ||| ||||||| ||||| | Sbjct 142047 ACACCGGCAAGGAGGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGGATCCCGGATC 141988 Query 19614 TATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCC 19673 | |||||| || || ||| | ||||| ||| |||||||||||| ||||| |||| Sbjct 141987 TGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCACACGACTGCC 141928 Query 19674 CTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACT---TACGTAG 19730 | || | | ||| | ||||| | |||| | || ||||| ||| |||| || Sbjct 141927 CCGGATTGGCTGACACTTGGGGCGAAGAGTTCGAGAAGCTGTAC---ACTGGGTACG-AG 141872 Query 19731 C-CCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAA 19789 | |||| || || | ||| ||| | |||| | ||| | || || || Sbjct 141871 CAGGAGGGTCGATTTATACGCCAGGTGAAGGCACAGGACCTATGGTTTGCCATCATCGAA 141812 Query 19790 AGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCA 19849 ||||| || || ||| ||||||||| |||||||| || ||| |||| Sbjct 141811 TCGCAGGTGGAAACGGGCGTTCCGTACATGCTGTACAAGGATGCGTGCAACCGCAAGAGC 141752 Query 19850 AATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTT 19909 |||||| ||||||||||| | || |||| ||||| |||||||| || || ||||| Sbjct 141751 AATCAGCAGAACATCGGCACCATAAAGTGTTCCAATCTGTGTACCGAGATAGTGGAGTAC 141692 Query 19910 TCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTC 19969 || | ||| || | || ||||| ||| |||| || | ||| | || || Sbjct 141691 TCGTCGAAGGATGAAATAGCGGTGTGCAATTTGGCCTCGATCGCGCTGAACATGTTTGTG 141632 Query 19970 AA---GGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGT 20026 || || | | | |||||||||||| || | || || | | | | ||||| Sbjct 141631 AAACCGGACAAAACGTACGACTTTGCCAAGCTGAAGGATGTCGCGAAGATTTTGACGCGC 141572 Query 20027 AATCTGAATCGCGTCATCGATCGGAACTTTTACCC--GACC-GAGGCGGCGCGCAAGTCG 20083 |||||||| | |||||| |||| || || ||| |||||| |||| || Sbjct 141571 AATCTGAACAAAATTATCGATATAAACTACTATCCAGTACCGGAGGCGAAGCGC---TCC 141515 Query 20084 AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATG 20143 || ||||| ||| ||||||||| ||||| || |||||| ||||||| | ||||| || Sbjct 141514 AACATGCGGCACAGGCCGATCGGTATCGGTGTTCAGGGCATGGCCGATGCGTTCATTTTG 141455 Query 20144 CTCGGCCTCTCATTCGACGATCCCA--AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGG 20201 | || | | ||| | | | |||| | |||| ||| | || ||||| Sbjct 141454 ATGCGCTATCCGTACGA--AAGCGAGGAGGCCCAAAAGCTGAACCAACAAATTTTCGAAA 141397 Query 20202 CCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCCAAAGAGGACGGCCCGT 20258 | | ||| ||| || ||||| || || || | ||| ||||| |||| Sbjct 141396 CAATCTACTACGGAGC---ATTGGAAGCGAGCTGTGAGTTGGCCGCCCGCGACGGACCGT 141340 Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGG---- 20314 |||| |||| | | ||| || | | | || ||||| ||| || |||||| Sbjct 141339 ACGAAACGTACGAAGGGAGTCCGGTAAGCAAAGGCATCCTGCAGTACGAAATGTGGAAGA 141280 Query 20315 -GG---CGTCACTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGG 20370 || ||| | || | | |||| || | |||| | || | ||||| Sbjct 141279 AGGAACCGT--CGGATCTTTGGAATTGGGCCGAGTTGAAGGAAAAAATTGCAAAGCACGG 141222 Query 20371 GCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | ||||| ||| |||| | || || ||||| ||||| ||||| || || ||| |||| Sbjct 141221 CATCCGCAATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTGGG 141162 Query 20431 GAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGG 20490 ||||||||| | ||||| ||||||||| ||||| | ||| || ||| ||| |||| Sbjct 141161 TAACAACGAGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCCGG 141102 Query 20491 TGAGTTCGTCA--TGGTAAACAAGCACCTGGTCCGCGACTTG-CAGAAGATCGATATGTG 20547 ||||| ||| |||| ||| | || ||| | | || ||| ||| ||| | | |||| Sbjct 141101 CGAGTT--TCAGGTGGTGAACCACCATCTGCTGCAAGATTTGACAG-CGATGGGTCTGTG 141045 Query 20548 GTCGCCCAAAATTAAGAATGAAAT--TGTCCGAGCCGGCGGGAGCG--TCCAGGCATTGG 20603 | | | || ||||| |||| ||||| | | | ||| || || | |||| | Sbjct 141044 GGATCTAGACATGAAGAACCAAATTCTGTCCAA--CAAC-GGATCGATTCAAAGCATCGA 140988 Query 20604 AT--ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAG 20661 || || || || | | || | |||| || || ||||| || | || | Sbjct 140987 ATCGATACCGAAGGAAATACGCGATCTGTACAAAACGGTGTGGGAGATTTCGGTTAAAAC 140928 Query 20662 CATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGT 20721 ||| | ||||| || || || || || | ||||| ||||| || ||| |||| | Sbjct 140927 GTGCATTAAGATGGCTGCTGACCGGGGTGCGTTTATCGATCAGTCGCAATCGTTCAACAT 140868 Query 20722 CTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACA 20780 | ||| | |||| | |||| ||||||| || || || | ||||||||| | | Sbjct 140867 ACACGTGGCCGAACCGAACTATGGC-AAGCTGACATCGATCCACTTTTACGGCTGGAAAA 140809 Query 20781 AGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 ||| || || |||||||||||||||||||| || Sbjct 140808 TGGGACTGAAAACGGGCATGTACTATCTGCGAAC 140775 >seq24 Length=2206587 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCT 60049 || ||||| ||| || || ||||||||| ||| || || | | || |||||||| Sbjct 1947713 GCATTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCAGCTT-TGCGTCCATCTTCTGGCT 1947655 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| ||||||||||| |||||||| || | ||||| |||||||||||||| ||||||| Sbjct 1947654 CAAGAAGCGTGGCCTTATGCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGA 1947595 Query 60110 GGG 60112 ||| Sbjct 1947594 GGG 1947592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548364555336240