Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq59 206 3e-48
seq7 125 8e-24
>seq59
Length=1145648
Score = 206 bits (228), Expect = 3e-48
Identities = 515/770 (67%), Gaps = 24/770 (3%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253
|||||||| ||| | ||||| |||||||| ||| | | || || | ||||||||| |
Sbjct 142483 ATGCGCGTTGCCATCGGTATTCACGGTGAAGACATTGATGC-TGCCATCGAGACGTACAA 142425
Query 53254 ----CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
||| |||| |||||||| || ||| | || ||| |||| || | ||
Sbjct 142424 TCTGCTTTCCGAGCGC----TACTTTACCCATGCCTCACCGACCATGTTTGCGGCCGCTA 142369
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
|| | | || ||| | ||| ||||| ||| | | ||| ||| ||| || || |
Sbjct 142368 CGCAGCGTCCGCAGCTTTCGTCTTGCTTTCTGCTTACCATGTCGGACGACAGTATTGAGG 142309
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| || ||||| ||||| ||| ||||||| | || ||||| | | | || ||||||||
Sbjct 142308 GTATTTACGATACGCTAAAGCAGTGTGCACTGATTTCCAAATCGGCCGGCGGTATCGGGC 142249
Query 53430 TCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488
| || ||| | | | || || || || || ||| || ||||| || | |
Sbjct 142248 TGAACGTGCACTG-CATTCGCGCCAAAGGAACGTACATCTCCGGCACGAATGGGATTTCG 142190
Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548
| || | ||||| ||||| ||||| | ||||||||||||||||||||| | ||||||
Sbjct 142189 AACGGGTTGGTGCCGATGCTGCGCGTTTACAACAACACGGCCCGGTACGTGGATCAGGGT 142130
Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608
|| ||||| || | || |||||||||||||| || ||||||| || || |
Sbjct 142129 GGCAACAAGCGGCCCGGCGCCTTTGCCATCTACCTCGAACCATGGCACGGGGATATATTC 142070
Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667
|||||||| || ||| || || | || ||| |||| ||| ||| ||||
Sbjct 142069 GAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCCCGCGACATGTTC 142010
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||| || |||||||| ||||| || |||||||| |||||| | |||| ||||
Sbjct 142009 TAC-GCCCTGTGGATCCCGGATCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAG 141951
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC---TACGGTGAGGAGTTTAA 53784
|||||||||||| |||| |||||||| | || || | | || || ||||| |
Sbjct 141950 CCTGATGTGCCCACACGACTGCCCCGGATT---GGCTGACACTTGGGGCGAAGAGTTCGA 141894
Query 53785 CGAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842
|| |||| |||| |||| |||| || | | |||| ||||| |
Sbjct 141893 GAAGCTGTACACTGGGTACGAGCAG--GAGGGTCGATTTATACGCCAGGTGAAGGCACAG 141836
Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902
|| ||||| ||| ||| || | |||||||| ||||| ||||||||| |||
Sbjct 141835 GACCTATGGTTTGCCATCATCGAATCGCAGGTGGAAACGGGCGTTCCGTACATGCTGTAC 141776
Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952
|||||| || |||| |||||||| ||| ||||||||||| ||| ||
Sbjct 141775 AAGGATGCGTGCAACCGCAAGAGCAATCAGCAGAACATCGGCACCATAAA 141726
Score = 104 bits (114), Expect = 3e-17
Identities = 297/451 (66%), Gaps = 7/451 (2%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | ||||| || ||||| |||| || ||||| ||||| |||||||| || ||| ||
Sbjct 141223 GGCATCCGCAATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTG 141164
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|| ||||||||| | ||||| ||||||||| ||||| | ||| || || || |
Sbjct 141163 GGTAACAACGAGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCC 141104
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTG 55656
|| |||||| || | ||| | || || | | || || ||| ||| |||
Sbjct 141103 GGCGAGTTTCAGGTGGTGAACCACCATCTGCTGCAAGATTTGACAGC-GATGGGTCTGTG 141045
Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA--- 55713
| | | | || |||| | ||| || ||| || || | || | | ||
Sbjct 141044 GGATCTAGACATGAAGAACCAAATTCTGTCCAACAACGGATCGATTCAAAGCATCGAATC 140985
Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773
||| || | | || | ||| ||||||||||||||| | || |
Sbjct 140984 GATACCGAAGGAAATACGCGATCTGTACAAAACGGTGTGGGAGATTTCGGTTAAAACGTG 140925
Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833
||| | ||| |||||| || ||||||| ||||| ||||| || || | |||||
Sbjct 140924 CATTAAGATGGCTGCTGACCGGGGTGCGTTTATCGATCAGTCGCAATCGTTCAACATACA 140865
Query 55834 CATGGA-GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892
| ||| ||| | | |||| ||| ||| ||||| ||||||||||| ||||| | ||
Sbjct 140864 CGTGGCCGAACCGAACTATGGC-AAGCTGACATCGATCCACTTTTACGGCTGGAAAATGG 140806
Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923
|||| || ||||| |||||||||||||| ||
Sbjct 140805 GACTGAAAACGGGCATGTACTATCTGCGAAC 140775
>seq7
Length=4015228
Score = 125 bits (138), Expect = 8e-24
Identities = 278/411 (68%), Gaps = 17/411 (4%)
Strand=Plus/Plus
Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036
|||| ||||||| |||||| | ||| | || | || || || || |||||||||
Sbjct 169774 AGCTCTGGCCAGTTGGTGTGGATGAAGTTGATCAGCAAACCTTTAATGTGCGAACCGTCC 169833
Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGG-----GA- 118089
||||| |||||||||||||||||| ||||||||| | ||| ||||| ||
Sbjct 169834 TGATCCTGATCGGTCATGATCATCAGCTTGCCGTACCGGAGCGTCT-TCAGGTCCTCGAT 169892
Query 118090 -GTTATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146
|| | | || | | ||| || || || | ||||| | || ||| | ||| |
Sbjct 169893 CGTAAGATACTTCTTCTTGTACTGCAGACCCAAAATCTTGATCAGATTGTTGATTTCGGC 169952
Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206
||||||| | |||||| |||||| || || ||||| || ||||||| |||| ||
Sbjct 169953 ATTTTCCAGAATCTGTTTGTGGGTGGCTTCGCGCACGTTCAGCAGCTTACCACGCAACGG 170012
Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266
|||||| || || |||| || || || || | ||| |||| || || || | || ||
Sbjct 170013 AAACACTCCGTACGTGTCGCGTCCGACCACTCCCAACCCGGAAACGGCCAGCGTTTTGGC 170072
Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323
||| || ||||| |||| || || || || | | | |||| ||||| ||
Sbjct 170073 CGAATCTCCCTCCGTAAGGATGAGCGTACAGTTGAGCGAATTGCGC---GTACCAGCGTC 170129
Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374
|| || || ||||||||||||| |||| |||| ||||| || || ||
Sbjct 170130 GTTGGCGTCTTCCAGCTTCGGAATGCCCTTAATCTTGGACTTCTTCGAGCC 170180
Score = 118 bits (130), Expect = 1e-21
Identities = 209/301 (69%), Gaps = 8/301 (3%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| | | |||||| |||||| || || | ||| ||||| ||||||||
Sbjct 169039 GTGAAGATGTACCTCGGGCTGGCACTATCCTTTCCGCCGGTCAGGCGCGTACCAAACTGG 169098
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| || | || ||||||| ||||||| ||| ||| ||||||| |||| || |
Sbjct 169099 CCGCCCGGATACAGCAGGTTGATGTTGTTGCTGCCGACGTAATTCTGCGCCAGGTTGATG 169158
Query 152149 ATCGTGCCCTGCAGACTCGCT--TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206
|| ||| ||||| || ||||||||||| ||||||| || || || | |||
Sbjct 169159 ATGGTG--GAGCAGAGCGACTGCTCACCGTGGTGGTACGCCGACTTTTCTGCCACCGATC 169216
Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA--AT 152264
| |||| ||| |||||||||| || | | || ||||| || ||||| ||
Sbjct 169217 CAGCCAGCTGGGCCACCTTCACCTCGCGCTTATCGTCGCGCTTGAAGCA--CGTAAACAT 169274
Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||| |||||| || ||||| || |||| || | |||||||| || || ||||
Sbjct 169275 TACCTTCCGCTGGCCCGGCTTCAACCCATCCAGCATGCACGGAATCGAGCGAATGTTGTC 169334
Query 152325 C 152325
|
Sbjct 169335 C 169335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547056137685800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |