Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59 206 3e-48 seq7 125 8e-24 >seq59 Length=1145648 Score = 206 bits (228), Expect = 3e-48 Identities = 515/770 (67%), Gaps = 24/770 (3%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 |||||||| ||| | ||||| |||||||| ||| | | || || | ||||||||| | Sbjct 142483 ATGCGCGTTGCCATCGGTATTCACGGTGAAGACATTGATGC-TGCCATCGAGACGTACAA 142425 Query 53254 ----CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 ||| |||| |||||||| || ||| | || ||| |||| || | || Sbjct 142424 TCTGCTTTCCGAGCGC----TACTTTACCCATGCCTCACCGACCATGTTTGCGGCCGCTA 142369 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || | | || ||| | ||| ||||| ||| | | ||| ||| ||| || || | Sbjct 142368 CGCAGCGTCCGCAGCTTTCGTCTTGCTTTCTGCTTACCATGTCGGACGACAGTATTGAGG 142309 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || ||||| ||||| ||| ||||||| | || ||||| | | | || |||||||| Sbjct 142308 GTATTTACGATACGCTAAAGCAGTGTGCACTGATTTCCAAATCGGCCGGCGGTATCGGGC 142249 Query 53430 TCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | || ||| | | | || || || || || ||| || ||||| || | | Sbjct 142248 TGAACGTGCACTG-CATTCGCGCCAAAGGAACGTACATCTCCGGCACGAATGGGATTTCG 142190 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || | ||||| ||||| ||||| | ||||||||||||||||||||| | |||||| Sbjct 142189 AACGGGTTGGTGCCGATGCTGCGCGTTTACAACAACACGGCCCGGTACGTGGATCAGGGT 142130 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || ||||| || | || |||||||||||||| || ||||||| || || | Sbjct 142129 GGCAACAAGCGGCCCGGCGCCTTTGCCATCTACCTCGAACCATGGCACGGGGATATATTC 142070 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 |||||||| || ||| || || | || ||| |||| ||| ||| |||| Sbjct 142069 GAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCCCGCGACATGTTC 142010 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || |||||||| ||||| || |||||||| |||||| | |||| |||| Sbjct 142009 TAC-GCCCTGTGGATCCCGGATCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAG 141951 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC---TACGGTGAGGAGTTTAA 53784 |||||||||||| |||| |||||||| | || || | | || || ||||| | Sbjct 141950 CCTGATGTGCCCACACGACTGCCCCGGATT---GGCTGACACTTGGGGCGAAGAGTTCGA 141894 Query 53785 CGAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 || |||| |||| |||| |||| || | | |||| ||||| | Sbjct 141893 GAAGCTGTACACTGGGTACGAGCAG--GAGGGTCGATTTATACGCCAGGTGAAGGCACAG 141836 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || ||||| ||| ||| || | |||||||| ||||| ||||||||| ||| Sbjct 141835 GACCTATGGTTTGCCATCATCGAATCGCAGGTGGAAACGGGCGTTCCGTACATGCTGTAC 141776 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 |||||| || |||| |||||||| ||| ||||||||||| ||| || Sbjct 141775 AAGGATGCGTGCAACCGCAAGAGCAATCAGCAGAACATCGGCACCATAAA 141726 Score = 104 bits (114), Expect = 3e-17 Identities = 297/451 (66%), Gaps = 7/451 (2%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||| || ||||| |||| || ||||| ||||| |||||||| || ||| || Sbjct 141223 GGCATCCGCAATTCGCTGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTG 141164 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||||||||| | ||||| ||||||||| ||||| | ||| || || || | Sbjct 141163 GGTAACAACGAGTCCTTCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCC 141104 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTG 55656 || |||||| || | ||| | || || | | || || ||| ||| ||| Sbjct 141103 GGCGAGTTTCAGGTGGTGAACCACCATCTGCTGCAAGATTTGACAGC-GATGGGTCTGTG 141045 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA--- 55713 | | | | || |||| | ||| || ||| || || | || | | || Sbjct 141044 GGATCTAGACATGAAGAACCAAATTCTGTCCAACAACGGATCGATTCAAAGCATCGAATC 140985 Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 ||| || | | || | ||| ||||||||||||||| | || | Sbjct 140984 GATACCGAAGGAAATACGCGATCTGTACAAAACGGTGTGGGAGATTTCGGTTAAAACGTG 140925 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 ||| | ||| |||||| || ||||||| ||||| ||||| || || | ||||| Sbjct 140924 CATTAAGATGGCTGCTGACCGGGGTGCGTTTATCGATCAGTCGCAATCGTTCAACATACA 140865 Query 55834 CATGGA-GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 | ||| ||| | | |||| ||| ||| ||||| ||||||||||| ||||| | || Sbjct 140864 CGTGGCCGAACCGAACTATGGC-AAGCTGACATCGATCCACTTTTACGGCTGGAAAATGG 140806 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||| || ||||| |||||||||||||| || Sbjct 140805 GACTGAAAACGGGCATGTACTATCTGCGAAC 140775 >seq7 Length=4015228 Score = 125 bits (138), Expect = 8e-24 Identities = 278/411 (68%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| |||||| | ||| | || | || || || || ||||||||| Sbjct 169774 AGCTCTGGCCAGTTGGTGTGGATGAAGTTGATCAGCAAACCTTTAATGTGCGAACCGTCC 169833 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGG-----GA- 118089 ||||| |||||||||||||||||| ||||||||| | ||| ||||| || Sbjct 169834 TGATCCTGATCGGTCATGATCATCAGCTTGCCGTACCGGAGCGTCT-TCAGGTCCTCGAT 169892 Query 118090 -GTTATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 || | | || | | ||| || || || | ||||| | || ||| | ||| | Sbjct 169893 CGTAAGATACTTCTTCTTGTACTGCAGACCCAAAATCTTGATCAGATTGTTGATTTCGGC 169952 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||||||| | |||||| |||||| || || ||||| || ||||||| |||| || Sbjct 169953 ATTTTCCAGAATCTGTTTGTGGGTGGCTTCGCGCACGTTCAGCAGCTTACCACGCAACGG 170012 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 |||||| || || |||| || || || || | ||| |||| || || || | || || Sbjct 170013 AAACACTCCGTACGTGTCGCGTCCGACCACTCCCAACCCGGAAACGGCCAGCGTTTTGGC 170072 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 ||| || ||||| |||| || || || || | | | |||| ||||| || Sbjct 170073 CGAATCTCCCTCCGTAAGGATGAGCGTACAGTTGAGCGAATTGCGC---GTACCAGCGTC 170129 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||||| |||| |||| ||||| || || || Sbjct 170130 GTTGGCGTCTTCCAGCTTCGGAATGCCCTTAATCTTGGACTTCTTCGAGCC 170180 Score = 118 bits (130), Expect = 1e-21 Identities = 209/301 (69%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| | | |||||| |||||| || || | ||| ||||| |||||||| Sbjct 169039 GTGAAGATGTACCTCGGGCTGGCACTATCCTTTCCGCCGGTCAGGCGCGTACCAAACTGG 169098 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || | || ||||||| ||||||| ||| ||| ||||||| |||| || | Sbjct 169099 CCGCCCGGATACAGCAGGTTGATGTTGTTGCTGCCGACGTAATTCTGCGCCAGGTTGATG 169158 Query 152149 ATCGTGCCCTGCAGACTCGCT--TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || ||| ||||| || ||||||||||| ||||||| || || || | ||| Sbjct 169159 ATGGTG--GAGCAGAGCGACTGCTCACCGTGGTGGTACGCCGACTTTTCTGCCACCGATC 169216 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA--AT 152264 | |||| ||| |||||||||| || | | || ||||| || ||||| || Sbjct 169217 CAGCCAGCTGGGCCACCTTCACCTCGCGCTTATCGTCGCGCTTGAAGCA--CGTAAACAT 169274 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| |||||| || ||||| || |||| || | |||||||| || || |||| Sbjct 169275 TACCTTCCGCTGGCCCGGCTTCAACCCATCCAGCATGCACGGAATCGAGCGAATGTTGTC 169334 Query 152325 C 152325 | Sbjct 169335 C 169335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547056137685800