Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 9e-14 seq6 86.0 4e-12 seq20 82.4 5e-11 >seq1 Length=5975090 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| |||||| ||| ||||| || |||||||| || || || || || Sbjct 5042923 AGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5042864 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || ||||| ||||| || | |||||| || || ||||| | ||||||| Sbjct 5042863 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5042804 Query 34609 TTGTC 34613 ||||| Sbjct 5042803 TTGTC 5042799 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| |||||| ||| ||||| || |||||||| || || || || || Sbjct 5043151 AGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5043092 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| || || ||||| | ||||||| Sbjct 5043091 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5043032 Query 34609 TTGTC 34613 ||||| Sbjct 5043031 TTGTC 5043027 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| |||||| ||| ||||| || |||||||| || || || || || Sbjct 5043379 AGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 5043320 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || | |||||| || || ||||| | ||||||| Sbjct 5043319 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 5043260 Query 34609 TTGTC 34613 ||||| Sbjct 5043259 TTGTC 5043255 >seq6 Length=4219845 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||| || || |||||| || ||||| || || | Sbjct 2100917 CGCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2100976 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || |||| || || || |||||||| || || | |||||| || ||||||| Sbjct 2100977 ACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCG 2101036 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||||||||||| |||||| Sbjct 2101037 GGATGCCCTCCTTGTCCTGGATCTT 2101061 >seq20 Length=2346360 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| || || || || || || Sbjct 834527 AGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGT 834586 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 834587 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCC 834646 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||| || |||| || Sbjct 834647 TTGTCCTGGATC-TTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGT 834705 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| ||||| || |||||||| Sbjct 834706 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314639954289443