Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq68 170 2e-37 seq6 136 3e-27 seq20 134 1e-26 seq57 132 4e-26 seq1 129 5e-25 >seq68 Length=961948 Score = 170 bits (188), Expect = 2e-37 Identities = 225/312 (72%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| ||| ||||||||||||| || | |||| | | || ||||| ||||| Sbjct 663597 ACGCACGACGATCTGTGGAACGCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAT 663538 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || ||| |||| ||||||||||| || |||||| |||| ||| | | |||| | || Sbjct 663537 GGCTTTCTGCGGATGTATTGGGCGAAGAAGATACTGGAGTGGACGAAAACGCCCGAGGAA 663478 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| || || || | | | || || |||||| | ||||| |||||| | || Sbjct 663477 GCGCTCGAAACGGCCATCTATCTGAACGACCGGTACAGTCTGGATGGGCGCGATCCGAAC 663418 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| || ||||||||||| || || |||||||||| || ||||||||||| Sbjct 663417 GGGTACGTCGGCTGTATGTGGTCGATCGCAGGCATACACGATCAGGGTTGGAAGGAGCGT 663358 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 | |||||||||||||| || ||||||||||| || || | | |||||||| || Sbjct 663357 GCGATTTTTGGCAAGATTCGGTACATGAACTATGAGGGATGCAAGCGCAAATTTAACGTC 663298 Query 135761 AATTTGTACGTG 135772 ||| || |||| Sbjct 663297 AATGCGTTCGTG 663286 >seq6 Length=4219845 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||||||||| || || || || Sbjct 2101145 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCATCG 2101086 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 2101085 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 2101026 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| ||| | ||| | ||||| |||||| Sbjct 2101025 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 2100966 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | ||| |||| | || |||| |||||| Sbjct 2100965 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGC 2100918 >seq20 Length=2346360 Score = 134 bits (148), Expect = 1e-26 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 834516 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834457 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 834456 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 834397 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||| ||| || || | ||||| |||||| Sbjct 834396 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAAC 834337 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGGGG 27211 || || |||||||||||| | || |||||| | || || |||||| Sbjct 834336 ATCCAGAAGGAGTCGACCCTGCACTTGGTTCTTCGACTTCGCGGGG 834291 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 834744 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834685 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 834684 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 834625 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||| ||| | || | ||||| |||||| Sbjct 834624 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 834565 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| || || || Sbjct 834564 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 834515 Score = 127 bits (140), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 26976 AATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAA 27035 |||||| | | |||||||| || || || || ||||| |||||| | || || || || Sbjct 834982 AATTTACAGG--ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAG 834925 Query 27036 GTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATA 27095 || || || || ||| |||| |||| || || || || || ||||| || || || Sbjct 834924 GTCGAGCCATCGGACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATT 834865 Query 27096 CCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT 27155 || || ||||| |||||||| || | |||||| || || |||| || || || | Sbjct 834864 CCTCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTG 834805 Query 27156 TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| || |||||||||||| | || ||||| | ||| |||| || || Sbjct 834804 TCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGAGGT 834745 Query 27216 AT 27217 || Sbjct 834744 AT 834743 >seq57 Length=1190389 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 631525 CATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 631466 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || || || || || ||||| || || || ||||| Sbjct 631465 GGACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCA 631406 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || ||| | || || ||||| Sbjct 631405 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAA 631346 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || ||| | ||| |||| |||| | || ||||| Sbjct 631345 CATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTCCGCGGTGG 631298 >seq1 Length=5975090 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||| ||| | || || || || || || || || Sbjct 5042933 CATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATC 5042992 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 5042993 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043052 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || ||||||| | ||| | || || || || Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| | ||| |||| |||||||| Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGGCAT 5043163 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||||||||| ||| |||| || ||||| || || || || Sbjct 5042705 CATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCCATC 5042764 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 5042765 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5042824 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || ||||||| | ||| | || || || || Sbjct 5042825 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5042884 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| | ||| |||| |||||||| Sbjct 5042885 CATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGGCAT 5042935 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||| ||| | || || || || || || || || Sbjct 5043161 CATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATC 5043220 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 5043221 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043280 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || ||||||| | ||| | || || || || Sbjct 5043281 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043340 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| | ||| |||| ||||| || Sbjct 5043341 CATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGGTAT 5043391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434791344025920