Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq66 111 1e-19 >seq66 Length=971934 Score = 111 bits (122), Expect = 1e-19 Identities = 226/336 (67%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||||| || ||||| ||||| ||||||||| | |||||||| || | ||| Sbjct 653777 GGTGACTTAGGACCGGTTTACGGTTTCCAGTGGCGCCACTTTGGTGCAGCGTACAAAACA 653836 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 || | | || || | || |||||| || ||| || | ||||||||||| | Sbjct 653837 TGCCACGACGATTACACAGGGCAGGGAATCGATCAGTTGGCAAAGGTGATCGACACGATC 653896 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| || || | || | | ||| | ||| |||| ||||| || || | || Sbjct 653897 AAGAACAATCCGTACGATCGTCGTATCATTATGAGCGCTTGGAATCCTTCCGACATTCCC 653956 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 | ||||| | || ||||| ||| | || || | ||| || |||| || || Sbjct 653957 ATCATGGCATTGCCACCGTGTCACTGTTTGGCACAGTTTTTCGTTGCTGATGGAGAACTC 654016 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 ||||||||| | ||||| ||||||| || | || || || |||||||||||||| ||| Sbjct 654017 TCCTGCCAGATGTATCAGCGATCGGCCGATGTTGGATTGGGCGTGCCGTTCAACATCGCT 654076 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | ||||| || | |||||||| |||||| Sbjct 654077 AGCTATTCACTGCTGACCCATATGATCGCGCATGTC 654112 Score = 111 bits (122), Expect = 1e-19 Identities = 226/336 (67%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| |||||||| | || ||||| | || ||||| |||||||||||||| || || Sbjct 654112 GACATGCGCGATCATATGGGTCAGCAGTGAATAGCTAGCGATGTTGAACGGCACGCCCAA 654053 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 || | || ||||||| ||||| | ||||||||| || || |||| || ||| | || Sbjct 654052 TCCAACATCGGCCGATCGCTGATACATCTGGCAGGAGAGTTCTCCATCAGCAACGAAAAA 653993 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || | ||| ||||| || | ||||| | || | || || ||||| || Sbjct 653992 CTGTGCCAAACAGTGACACGGTGGCAATGCCATGATGGGAATGTCGGAAGGATTCCAAGC 653933 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 || ||| | ||| | | || | || || ||| | ||||||||||| | || Sbjct 653932 GCTCATAATGATACGACGATCGTACGGATTGTTCTTGATCGTGTCGATCACCTTTGCCAA 653873 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 ||| || |||||| || | || || | | || ||| | || |||||||| Sbjct 653872 CTGATCGATTCCCTGCCCTGTGTAATCGTCGTGGCATGTTTTGTACGCTGCACCAAAGTG 653813 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | ||||||||| ||||| ||||| || ||||| || Sbjct 653812 GCGCCACTGGAAACCGTAAACCGGTCCTAAGTCACC 653777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448131445743120