Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 179 9e-40
seq57 159 8e-34
seq20 149 1e-30
seq6 145 2e-29
>seq1
Length=5975090
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || ||||| || || ||||||||||| |||| ||||| | ||||||
Sbjct 5043145 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043086
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || || || || || || || | ||| |||||||||
Sbjct 5043085 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043026
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || ||||||||||| || ||||||||||| ||||| |||
Sbjct 5043025 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTC 5042966
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || || | ||||||
Sbjct 5042965 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || ||||| || || ||||||||||| |||| ||||| | ||||||
Sbjct 5043373 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043314
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || || || || || || || | ||| |||||||||
Sbjct 5043313 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043254
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || ||||||||||| || ||||||||||| ||||| |||
Sbjct 5043253 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTC 5043194
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || || | ||||||
Sbjct 5043193 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || ||||| || || ||||||||||| |||| ||||| | ||||||
Sbjct 5042917 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5042858
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || || || || || || || | ||| |||||||||
Sbjct 5042857 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5042798
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || ||||||||||| || |||||||| || ||||| |||
Sbjct 5042797 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTC 5042738
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || |||||||| || || | ||||| ||
Sbjct 5042737 TTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 5042703
>seq57
Length=1190389
Score = 159 bits (176), Expect = 8e-34
Identities = 168/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || ||||| || || || || || ||||| || |||| |||||
Sbjct 631304 CGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTG 631363
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| |||||||||||||| |||||||| || || || || || ||||||| ||||
Sbjct 631364 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCT 631423
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| ||||||||||| ||||| || ||||| ||||| || || ||||| ||
Sbjct 631424 TCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGT 631483
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || ||||| || || || || | ||||||
Sbjct 631484 GTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524
>seq20
Length=2346360
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| | ||| || || ||||| || |||||||| || || | ||
Sbjct 834520 TCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAG 834579
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||| || ||||||||||| || |||||||| | || || || || |||||||
Sbjct 834580 AGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAAT 834639
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| |||||||| ||||| ||||| || || |||||
Sbjct 834640 ACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTC 834699
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| || || || ||||| || || | ||||||
Sbjct 834700 CAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| | ||| || || ||||| || |||||||| || || | ||
Sbjct 834748 TCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAG 834807
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| ||||||||||| || |||||||| | || || || || |||||||
Sbjct 834808 AGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAAT 834867
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| |||||||| ||||| ||||| || || |||||
Sbjct 834868 ACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTC 834927
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| || || || ||||| || || | ||||||
Sbjct 834928 CAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972
Score = 147 bits (162), Expect = 5e-30
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || | ||| || || ||||| || |||||||| || || | || ||
Sbjct 834296 CGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTA 834355
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || ||||||||||| || |||||||| | || || || || ||||||| ||
Sbjct 834356 CGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCC 834415
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 834416 TCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGC 834475
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || || ||||| || || | ||||||
Sbjct 834476 GTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
>seq6
Length=4219845
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || ||||| || ||||| || |||||||| || || | ||||| | ||| ||
Sbjct 2100934 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 2100993
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| || || || || || || || | || |||||||||
Sbjct 2100994 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC 2101053
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||| || || || || ||||| ||||| || |||
Sbjct 2101054 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTC 2101113
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| || || || || | |||||| ||
Sbjct 2101114 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 2101148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158804902438415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |