Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq1 102 6e-17 seq57 89.7 3e-13 >seq6 Length=4219845 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || ||||| || || || | Sbjct 2101148 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCA 2101089 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || || ||||| || || | ||||| || Sbjct 2101088 TCGGATACGATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 2101030 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || ||||| |||| |||||| | ||| || Sbjct 2101029 TCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTA 2100970 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 2100969 CAACATCCAGAAGGAGTCGAC 2100949 >seq1 Length=5975090 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| ||||| ||||| | | Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5042993 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | ||||||||||| Sbjct 5042994 GACACCATCGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043052 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||| | ||||| | || || || Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 5043113 CATCCAGAAGGAATCCAC 5043130 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| ||||| ||||| | | Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5043221 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | ||||||||||| Sbjct 5043222 GACACCATCGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043280 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || |||||||| | ||||| | || || || Sbjct 5043281 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043340 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 5043341 CATCCAGAAGGAATCCAC 5043358 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || ||||||||||||||||| || |||| | | | Sbjct 5040307 ATGCAGATCTTCGTGAAAACATTAACCGGAAAAACGATCACTCTTGATGTTGTCGCGTCA 5040366 Query 23671 GACACTGTT---GAAATATTAAAACAAAAAATTGCT-GACAAAGAAGGTGTACCGCCAGA 23726 || || ||| || || | ||||||||| | || || |||||| | || || Sbjct 5040367 GAGACGGTTTTGGACAT-TAAAAACAAAA---TCCTAGAACGCGAAGGTATTGAACCGGA 5040422 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | |||||||| |||||||| ||||||| | || | | || ||||| Sbjct 5040423 CCAGCAGCGTATCATATTTGCTGGCAAACAGTTGGAAGATGGTCGGATTATATCGGATTA 5040482 Query 23787 CAACATACA 23795 ||| || || Sbjct 5040483 CAATATTCA 5040491 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| || || || || ||||| || ||||| || || ||||| | Sbjct 5042703 AACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCCA 5042762 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | || ||||| || || | |||||||| Sbjct 5042763 TCCGACACCATCGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCGCCAGA 5042821 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||| || || || |||||||| | ||||| | || || Sbjct 5042822 TCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 5042881 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 5042882 TAACATCCAGAAGGAATCCAC 5042902 >seq57 Length=1190389 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| || || || ||||| || || || || | || Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || || || ||||| | || |||||||| Sbjct 631464 GACACGATCGAGAATGTGAAGGC-CAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCA 631406 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| || | ||||| | || ||||| Sbjct 631405 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAA 631346 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 631345 CATTCAGAAGGAATCTAC 631328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337913323352468