Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 8e-34
seq57 147 5e-30
seq20 136 1e-26
seq6 129 1e-24
>seq1
Length=5975090
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || ||||| || |||||||||||||| || || |||
Sbjct 5042937 CAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 5042996
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || |||||||||||||| || |||||||| || || |||||
Sbjct 5042997 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5043056
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| |||||||| | || || | || |||||| ||
Sbjct 5043057 CGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5043116
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 5043117 CAGAAGGAATCCACCCTCCATCTGGT 5043142
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || |||||||| ||||| || || |||
Sbjct 5042709 CAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCCATCCGAC 5042768
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || |||||||||||||| || |||||||| || || |||||
Sbjct 5042769 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5042828
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| |||||||| | || || | || |||||| ||
Sbjct 5042829 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5042888
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 5042889 CAGAAGGAATCCACCCTCCATCTGGT 5042914
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || ||||| || |||||||||||||| || || |||
Sbjct 5043165 CAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 5043224
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || |||||||||||||| || |||||||| || || |||||
Sbjct 5043225 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5043284
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| |||||||| | || || | || |||||| ||
Sbjct 5043285 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5043344
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 5043345 CAGAAGGAATCCACCCTCCATCTGGT 5043370
>seq57
Length=1190389
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || || ||||| || ||||| || || |||
Sbjct 631521 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 631462
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| ||||| || |||||||| ||||| || |||||
Sbjct 631461 ACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAG 631402
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | || || | || || ||| |
Sbjct 631401 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATT 631342
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| || ||||| || || ||||| || || |||||
Sbjct 631341 CAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTC 631306
>seq20
Length=2346360
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| || ||||| || || |||
Sbjct 834741 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 834682
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| |||||||| || || || ||||| || |||||
Sbjct 834681 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834622
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 834621 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATC 834562
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 834561 CAGAAGGAGTCGACCCTGCA-CTTG 834538
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| || ||||| || || |||
Sbjct 834969 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATCGGAC 834910
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| |||||||| || || || ||||| || |||||
Sbjct 834909 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834850
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || ||||| | ||||| |||| || ||| ||
Sbjct 834849 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 834790
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 834789 CAGAAGGAGTCGACCCTGCA-CTTG 834766
Score = 132 bits (146), Expect = 1e-25
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| || ||||| || || |||
Sbjct 834513 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 834454
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| |||||||| || || || ||||| || |||||
Sbjct 834453 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834394
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || || || | ||||| |||| || ||| ||
Sbjct 834393 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAACATC 834334
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || ||||| |||| ||
Sbjct 834333 CAGAAGGAGTCGACCCTGCA-CTTGGTT 834307
>seq6
Length=4219845
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || || || || || || ||||| || || ||
Sbjct 2101142 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCATCGGAT 2101083
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| |||||||| || || ||||| ||||| |||||
Sbjct 2101082 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAG 2101023
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || ||| | || || |||| || ||| ||
Sbjct 2101022 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATC 2100963
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 2100962 CAGAAGGAGTCGACCCTTCATCTGGT 2100937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203370753600974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |