Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq57 147 5e-30 seq20 136 1e-26 seq6 129 1e-24 >seq1 Length=5975090 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || |||||||||||||| || || ||| Sbjct 5042937 CAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 5042996 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || |||||||| || || ||||| Sbjct 5042997 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5043056 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || | || |||||| || Sbjct 5043057 CGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5043116 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 5043117 CAGAAGGAATCCACCCTCCATCTGGT 5043142 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || |||||||| ||||| || || ||| Sbjct 5042709 CAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCCATCCGAC 5042768 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || |||||||| || || ||||| Sbjct 5042769 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5042828 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || |||||| || Sbjct 5042829 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5042888 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 5042889 CAGAAGGAATCCACCCTCCATCTGGT 5042914 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || |||||||||||||| || || ||| Sbjct 5043165 CAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 5043224 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || |||||||| || || ||||| Sbjct 5043225 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 5043284 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || |||||| || Sbjct 5043285 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 5043344 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 5043345 CAGAAGGAATCCACCCTCCATCTGGT 5043370 >seq57 Length=1190389 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 631521 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 631462 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| || |||||||| ||||| || ||||| Sbjct 631461 ACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAG 631402 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || | || || ||| | Sbjct 631401 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATT 631342 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || ||||| || || ||||| Sbjct 631341 CAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTC 631306 >seq20 Length=2346360 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 834741 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 834682 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 834681 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834622 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || || ||| | ||||| |||| || ||| || Sbjct 834621 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATC 834562 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 834561 CAGAAGGAGTCGACCCTGCA-CTTG 834538 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 834969 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATCGGAC 834910 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 834909 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834850 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || ||||| | ||||| |||| || ||| || Sbjct 834849 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 834790 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 834789 CAGAAGGAGTCGACCCTGCA-CTTG 834766 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 834513 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 834454 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 834453 ACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAG 834394 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || || || | ||||| |||| || ||| || Sbjct 834393 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAACATC 834334 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || ||||| |||| || Sbjct 834333 CAGAAGGAGTCGACCCTGCA-CTTGGTT 834307 >seq6 Length=4219845 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || || || ||||| || || || Sbjct 2101142 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCATCGGAT 2101083 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || ||||| ||||| ||||| Sbjct 2101082 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAG 2101023 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 2101022 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATC 2100963 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 2100962 CAGAAGGAGTCGACCCTTCATCTGGT 2100937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203370753600974